View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_low_11 (Length: 584)
Name: NF2749_low_11
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_11 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 188 - 568
Target Start/End: Complemental strand, 29917487 - 29917079
Alignment:
| Q |
188 |
cagcgtgttggatggatttacggatcaattactgaagatgtgctcactggttataggatgcataataaaggatggaaatcagtttactatgtgacaaaac |
287 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||| |||||| |||||||||||||||||||||||| ||||||||| |||||||||| ||| || |||| |
|
|
| T |
29917487 |
cagcgtgttggatggatctatggatcagttactgaggatgtggtcactggttataggatgcataatagaggatggaagtcagtttactgtgtaactaaac |
29917388 |
T |
|
| Q |
288 |
atgatgccttccgcggaacagctcccatcaatctcactgataagctgcatcaagtttttagatggattactagctcagttgagatatttttctctataaa |
387 |
Q |
| |
|
||| |||||||| ||||| |||||||||||||||||||||| | ||||||| ||| |||||||| |||| |||||||||||||||| ||||||| ||| |
|
|
| T |
29917387 |
gtgacgccttccgtggaactgctcccatcaatctcactgataggttgcatcaggttcttagatgggctactggctcagttgagatattcttctctaaaaa |
29917288 |
T |
|
| Q |
388 |
caatccaattatggctaccc-----------------caatggatagcataccttaatgtctgcatttatcctttcacttctgtttttcttatcatctat |
470 |
Q |
| |
|
|||| |||||||||| |||| || ||||||||||||||||||| | |||||||| |||||||| |||||||||| ||||| |
|
|
| T |
29917287 |
caatgcaattatggccacccgaagaatgaaatttcttcagaggatagcataccttaatgttggaatttatccattcacttcgttttttcttattgtctat |
29917188 |
T |
|
| Q |
471 |
tgct-----------ctctccctcttctcaggacagttcactgttcaaacacttgatcacacttttcttgcttacctcttggctattaccgtgactcaat |
559 |
Q |
| |
|
|||| |||||||||||||| |||||||||| ||| |||||||| || ||||||| | |||||||||||||||||||| |||||| | |
|
|
| T |
29917187 |
tgcttcctgcctgcactctccctcttctctggacagttcattgtccaaacactcaatgtcacttttttggcttacctcttggctattactgtgactttgt |
29917088 |
T |
|
| Q |
560 |
gcattcttg |
568 |
Q |
| |
|
||||||||| |
|
|
| T |
29917087 |
gcattcttg |
29917079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 188 - 317
Target Start/End: Original strand, 47919737 - 47919866
Alignment:
| Q |
188 |
cagcgtgttggatggatttacggatcaattactgaagatgtgctcactggttataggatgcataataaaggatggaaatcagtttactatgtgacaaaac |
287 |
Q |
| |
|
||||||||||||||||| || |||||| ||||||| |||||| ||||| |||||||||||||||||| ||||||||| |||||||||| ||| || |||| |
|
|
| T |
47919737 |
cagcgtgttggatggatatatggatcagttactgaggatgtggtcacttgttataggatgcataatagaggatggaagtcagtttactgtgtaactaaac |
47919836 |
T |
|
| Q |
288 |
atgatgccttccgcggaacagctcccatca |
317 |
Q |
| |
|
|| |||||||||||||| |||||||||| |
|
|
| T |
47919837 |
tagacgccttccgcggaactgctcccatca |
47919866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 53796 - 53893
Alignment:
| Q |
5 |
gcaggtggctttcaagtttaatgaagatattgcattattaaacattagaattacaagtaatacgtgtagctagctgatatcatatggtgaattcttta |
102 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
53796 |
gcaggtagctttcaagtttaatcactatattgcattattaaacattagaattacatgtaatacgtgaagcaggctgatatcatatggtgaattcttta |
53893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University