View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_low_12 (Length: 581)

Name: NF2749_low_12
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_low_12
NF2749_low_12
[»] scaffold0392 (1 HSPs)
scaffold0392 (1-573)||(1623-2194)
[»] chr4 (5 HSPs)
chr4 (431-471)||(8472547-8472587)
chr4 (286-360)||(49457099-49457173)
chr4 (432-477)||(13722786-13722831)
chr4 (434-477)||(13748508-13748551)
chr4 (431-471)||(9504581-9504621)
[»] chr8 (3 HSPs)
chr8 (430-481)||(36272207-36272258)
chr8 (432-472)||(3643720-3643760)
chr8 (431-475)||(5413950-5413994)
[»] chr6 (1 HSPs)
chr6 (441-478)||(13375269-13375306)
[»] chr5 (1 HSPs)
chr5 (430-474)||(10214050-10214094)
[»] chr2 (6 HSPs)
chr2 (430-474)||(6774723-6774767)
chr2 (430-482)||(10734580-10734632)
chr2 (430-474)||(14408734-14408778)
chr2 (432-478)||(29509814-29509860)
chr2 (430-478)||(15992716-15992763)
chr2 (430-478)||(36322716-36322763)
[»] scaffold0045 (1 HSPs)
scaffold0045 (430-477)||(55987-56033)
[»] chr7 (1 HSPs)
chr7 (431-478)||(39887648-39887694)
[»] chr3 (1 HSPs)
chr3 (431-469)||(38692789-38692827)
[»] chr1 (4 HSPs)
chr1 (430-480)||(34404163-34404212)
chr1 (432-473)||(596325-596366)
chr1 (436-468)||(9541969-9542001)
chr1 (431-463)||(27728190-27728222)


Alignment Details
Target: scaffold0392 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: scaffold0392
Description:

Target: scaffold0392; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 1 - 573
Target Start/End: Original strand, 1623 - 2194
Alignment:
Q  1 aatctgagcttttttcatttctgttannnnnnnnctcagtgaaatttttatttgggatggattatttcttcttctttttgctgttattacttgtgttttg 100  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1623 aatctgagcttttttcatttctgttattttttttctcagtgaaatttttatttgggatggattatttcttcttctttttgctgttattacttgtgttttg 1722  T
Q  101 ggcttcatagtgcattgaattgatgcggcattcacttgaatttgcactctgcaaagtgaacaagatgaaatactgtgatgaagtgtggtgattggaaggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1723 ggcttcatagtgcattgaattgatgcggcattcacttgaatttgcactctgcaaagtgaacaagatgaaatactgtgatgaagtgtggtgattggaaggt 1822  T
Q  201 attgcgagtgtagtagcatattgaattggaggtggaattttttagtcagatcatggatcatgtaagggatgtgggtagtgtagtggggactgtgctgatt 300  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1823 attgtgagtgtagtagcatattgaattggaggtggaatttt-tagtcagatcatggatcatgtaagggatgtgggtagtgtagtggggactgtgctgatt 1921  T
Q  301 cccatgcggtttgtttggccttatggtggaagtagtgtttttctcagcggttctttcacacggtgcgtattttgacatcaatatcctagtgcatgtttgg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1922 cccatgcggtttgtttggccttatggtggaagtagtgtttttctcagcggttctttcacacggtgcgtattttgacatcaatatcctagtgcatgtttgg 2021  T
Q  401 agtcaccgtgagtttgaggacataccatacgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtgacatactttgattgtaccaaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2022 agtcaccgtgagtttgaggacataccatacgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtgacatactttgattgtaccaaaa 2121  T
Q  501 acatcttcacgtgaatcctattgtgcacttaatctcttgcactagaatgctctagtttacttttgttcatctc 573  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2122 acatcttcacgtgaatcctattgtgcacttaatctcttgcactagaatgctctagtttacttttgtttatctc 2194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 431 - 471
Target Start/End: Complemental strand, 8472587 - 8472547
Alignment:
Q  431 gtgattttgttgaagctacaaagtgtagcttttgcgaaaat 471  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  8472587 gtgattttgttgaagctacaaagtgtagcttttgccaaaat 8472547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 360
Target Start/End: Complemental strand, 49457173 - 49457099
Alignment:
Q  286 gggactgtgctgattcccatgcggtttgtttggccttatggtggaagtagtgtttttctcagcggttctttcaca 360  Q
    ||||| |||||||||||  |||||||||| ||||| ||||| ||||| | ||||| |||||| ||||||||||||    
T  49457173 gggacggtgctgattccagtgcggtttgtgtggccatatgggggaagaactgtttatctcagtggttctttcaca 49457099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 432 - 477
Target Start/End: Original strand, 13722786 - 13722831
Alignment:
Q  432 tgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggt 477  Q
    ||||||||||||||||||||||||| | |||||| |||||||||||    
T  13722786 tgattttgttgaagctacaaagtgtggtttttgccaaaatcacggt 13722831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 477
Target Start/End: Original strand, 13748508 - 13748551
Alignment:
Q  434 attttgttgaagctacaaagtgtagcttttgcgaaaatcacggt 477  Q
    ||||||||||||||||||||||| | |||||| |||||||||||    
T  13748508 attttgttgaagctacaaagtgtggtttttgccaaaatcacggt 13748551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 471
Target Start/End: Original strand, 9504581 - 9504621
Alignment:
Q  431 gtgattttgttgaagctacaaagtgtagcttttgcgaaaat 471  Q
    ||||||||||||||||| |||||| |||||||||| |||||    
T  9504581 gtgattttgttgaagctccaaagtctagcttttgccaaaat 9504621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 430 - 481
Target Start/End: Original strand, 36272207 - 36272258
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtgaca 481  Q
    |||||||||||||||||| ||||| ||||||||||| | |||||||||||||    
T  36272207 cgtgattttgttgaagcttcaaagcgtagcttttgccataatcacggtgaca 36272258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 472
Target Start/End: Complemental strand, 3643760 - 3643720
Alignment:
Q  432 tgattttgttgaagctacaaagtgtagcttttgcgaaaatc 472  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  3643760 tgattttattgaagctacaaagtgtagcttttgcaaaaatc 3643720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 475
Target Start/End: Original strand, 5413950 - 5413994
Alignment:
Q  431 gtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacg 475  Q
    |||| |||||||||||| ||||||||||||||||  |||||||||    
T  5413950 gtgagtttgttgaagctccaaagtgtagcttttgtcaaaatcacg 5413994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 13375306 - 13375269
Alignment:
Q  441 tgaagctacaaagtgtagcttttgcgaaaatcacggtg 478  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  13375306 tgaagctacaaagtgtagcttttgccaaaatcacggtg 13375269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 10214050 - 10214094
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcac 474  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||    
T  10214050 cgtgatgttgttgatgctacaaagtgtagcttttgccaaaatcac 10214094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 474
Target Start/End: Original strand, 6774723 - 6774767
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcac 474  Q
    |||||||||||||||||| | ||||||||||||||| ||||||||    
T  6774723 cgtgattttgttgaagctccgaagtgtagcttttgctaaaatcac 6774767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 482
Target Start/End: Original strand, 10734580 - 10734632
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtgacat 482  Q
    |||||||||||||||||| ||||||| || |||||||||| |||||| |||||    
T  10734580 cgtgattttgttgaagctccaaagtgcagtttttgcgaaagtcacggagacat 10734632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 474
Target Start/End: Complemental strand, 14408778 - 14408734
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcac 474  Q
    |||||||||||||||||| ||||||||||||||| | ||||||||    
T  14408778 cgtgattttgttgaagctccaaagtgtagctttttctaaaatcac 14408734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 29509860 - 29509814
Alignment:
Q  432 tgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtg 478  Q
    ||||||||||||||||  |||||||||||||||  ||||||||||||    
T  29509860 tgattttgttgaagctcgaaagtgtagcttttgttaaaatcacggtg 29509814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 15992763 - 15992716
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtg 478  Q
    ||||||||| |||||||||||| ||||||||||||  ||||||||||||    
T  15992763 cgtgattttattgaagctacaa-gtgtagcttttgtcaaaatcacggtg 15992716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 430 - 478
Target Start/End: Complemental strand, 36322763 - 36322716
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtg 478  Q
    ||||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  36322763 cgtgattttgtagaagctacaaagtgtagtttttg-aaaaatcacggtg 36322716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 430 - 477
Target Start/End: Original strand, 55987 - 56033
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggt 477  Q
    ||||||||||||||||||||||||||| | |||||| |||||||||||    
T  55987 cgtgattttgttgaagctacaaagtgtggtttttgc-aaaatcacggt 56033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 478
Target Start/End: Complemental strand, 39887694 - 39887648
Alignment:
Q  431 gtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtg 478  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||    
T  39887694 gtgattttgcagaagctacaaagtgtagcttttg-gaaaatcacggtg 39887648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 469
Target Start/End: Complemental strand, 38692827 - 38692789
Alignment:
Q  431 gtgattttgttgaagctacaaagtgtagcttttgcgaaa 469  Q
    ||||||||||||||||| |||||||||| ||||||||||    
T  38692827 gtgattttgttgaagctccaaagtgtagtttttgcgaaa 38692789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 480
Target Start/End: Original strand, 34404163 - 34404212
Alignment:
Q  430 cgtgattttgttgaagctacaaagtgtagcttttgcgaaaatcacggtgac 480  Q
    |||| ||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  34404163 cgtgcttttgttgaagctacgaagtgtagcttttgc-aaaattacggtgac 34404212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 432 - 473
Target Start/End: Complemental strand, 596366 - 596325
Alignment:
Q  432 tgattttgttgaagctacaaagtgtagcttttgcgaaaatca 473  Q
    ||||||||| ||||| |||||||||||||||||| |||||||    
T  596366 tgattttgtcgaagccacaaagtgtagcttttgccaaaatca 596325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 468
Target Start/End: Original strand, 9541969 - 9542001
Alignment:
Q  436 tttgttgaagctacaaagtgtagcttttgcgaa 468  Q
    ||||||||| |||||||||||||||||||||||    
T  9541969 tttgttgaacctacaaagtgtagcttttgcgaa 9542001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 431 - 463
Target Start/End: Complemental strand, 27728222 - 27728190
Alignment:
Q  431 gtgattttgttgaagctacaaagtgtagctttt 463  Q
    ||||||||||||||||| |||||||||||||||    
T  27728222 gtgattttgttgaagctccaaagtgtagctttt 27728190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University