View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_13 (Length: 576)
Name: NF2749_low_13
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 43606554 - 43606222
Alignment:
| Q |
19 |
agaggaagttaggggctcgttctgattcaattagcaattattagaggtttaaattgacttgaaccaataaaactacataaactatttcgagtgaaataat |
118 |
Q |
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| T |
43606554 |
agaggaagttaggggctcgttctgtttcaattagcaattgttaaag-tttaaattgacttgaaccaataaaactacataaactatttcgagtgaaataat |
43606456 |
T |
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| Q |
119 |
acatagttttatcaaccatgtatctaaatacttctaaatactttttatttgaggttgtgccaccaactaagtatttctc-ttctacacacaatacagttg |
217 |
Q |
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| T |
43606455 |
acatagttttatcaaccat--atgtatctgtgtcgaaatactttttatttgaggttgtgccaccaa-taagtatttctccttctacacacaatacagttg |
43606359 |
T |
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| Q |
218 |
ttaggaacaacgtcattttcctaagagcatagcgtcaaaattgacacatatattacgggttggaacaagcactg-aaacatatgaaaaaatatttgcggt |
316 |
Q |
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| T |
43606358 |
ttgggaacaacgtcattttcctaagagcatagcgtcaaaattgacacatatattacgggttggaacaagcactgaaaacatatgaaaaaatatttgcggt |
43606259 |
T |
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| Q |
317 |
ctttatcatccatgctacacttgcttagtgtaccaaa |
353 |
Q |
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| T |
43606258 |
ctttatcatccatgctacacttgcttagagtaccaaa |
43606222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 474 - 564
Target Start/End: Complemental strand, 43606189 - 43606096
Alignment:
| Q |
474 |
ttaatcaaggtcttaagttcgaatttaattttgggcatgc---aatgttaaaactcttaaaagagcttgccgtctatttggatcccaccatatt |
564 |
Q |
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| T |
43606189 |
ttaatcaaggtcttaagttcgaatttaactttgggcatgcaataatgttaaaattcttaaaagaacttgccgtctatttgagtcccaccatatt |
43606096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 376 - 422
Target Start/End: Complemental strand, 43606232 - 43606186
Alignment:
| Q |
376 |
agagtaccaaaacttttattttattttatagataagcaataaattaa |
422 |
Q |
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| T |
43606232 |
agagtaccaaaacttttattttattttatagataagcaataaattaa |
43606186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 30614803 - 30614762
Alignment:
| Q |
473 |
cttaatcaaggtcttaagttcgaatttaattttgggcatgca |
514 |
Q |
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| T |
30614803 |
cttaaccaaggtcttaagtttgaatttagttttgggcatgca |
30614762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 460 - 496
Target Start/End: Original strand, 30624185 - 30624221
Alignment:
| Q |
460 |
cgatctcttttaacttaatcaaggtcttaagttcgaa |
496 |
Q |
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| T |
30624185 |
cgatctcttttaacttaatcaaggttttaagctcgaa |
30624221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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