View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_low_15 (Length: 557)

Name: NF2749_low_15
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_low_15
NF2749_low_15
[»] chr3 (17 HSPs)
chr3 (319-542)||(51231143-51231367)
chr3 (13-310)||(53467030-53467341)
chr3 (214-313)||(49308124-49308223)
chr3 (217-305)||(37915410-37915498)
chr3 (256-313)||(49308832-49308889)
chr3 (215-268)||(50704311-50704364)
chr3 (214-305)||(1093175-1093265)
chr3 (261-305)||(50703745-50703789)
chr3 (257-305)||(55336841-55336888)
chr3 (274-305)||(51149164-51149195)
chr3 (259-305)||(18387649-18387694)
chr3 (218-280)||(20111861-20111923)
chr3 (181-215)||(50704264-50704298)
chr3 (144-215)||(37915513-37915586)
chr3 (273-310)||(55337600-55337637)
chr3 (273-313)||(25080810-25080850)
chr3 (214-242)||(26250201-26250229)
[»] chr4 (8 HSPs)
chr4 (12-305)||(51702669-51702976)
chr4 (216-305)||(49648192-49648281)
chr4 (177-311)||(24844081-24844228)
chr4 (218-313)||(33114078-33114176)
chr4 (257-310)||(11380990-11381042)
chr4 (215-304)||(49479909-49479997)
chr4 (183-215)||(33114192-33114224)
chr4 (273-313)||(33352123-33352163)
[»] chr8 (2 HSPs)
chr8 (24-313)||(20104825-20105127)
chr8 (273-313)||(37550955-37550995)
[»] chr2 (8 HSPs)
chr2 (12-214)||(32394751-32394954)
chr2 (216-305)||(42847934-42848023)
chr2 (215-305)||(1677572-1677662)
chr2 (216-305)||(42848613-42848702)
chr2 (138-215)||(1678240-1678319)
chr2 (216-305)||(45632379-45632467)
chr2 (214-268)||(1678331-1678385)
chr2 (214-280)||(30266349-30266415)
[»] chr7 (7 HSPs)
chr7 (138-305)||(32577238-32577419)
chr7 (138-309)||(12294138-12294324)
chr7 (217-313)||(12293460-12293556)
chr7 (216-312)||(42745629-42745725)
chr7 (144-311)||(9146060-9146242)
chr7 (262-305)||(7831635-7831678)
chr7 (214-278)||(32576627-32576690)
[»] scaffold0136 (2 HSPs)
scaffold0136 (218-309)||(23689-23780)
scaffold0136 (183-215)||(23641-23673)
[»] chr5 (7 HSPs)
chr5 (25-135)||(10951691-10951809)
chr5 (140-304)||(210317-210496)
chr5 (214-305)||(41609509-41609600)
chr5 (214-307)||(14098382-14098475)
chr5 (25-135)||(4084280-4084398)
chr5 (257-312)||(29630386-29630440)
chr5 (270-305)||(14098307-14098342)
[»] chr1 (4 HSPs)
chr1 (257-313)||(51097509-51097564)
chr1 (262-310)||(36930179-36930227)
chr1 (273-313)||(36681522-36681562)
chr1 (262-299)||(43250883-43250920)
[»] chr6 (1 HSPs)
chr6 (220-280)||(18970615-18970675)


Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 319 - 542
Target Start/End: Original strand, 51231143 - 51231367
Alignment:
Q  319 tcaaattacaaatgcaggcctatccttttcaaactattattttccaagtcagctatgaatagaatttaacaaactaaaaacc-actcgtaaaacaaacaa 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  51231143 tcaaattacaaatgcaggcctatccttttcaaactattattttccaagtcagctatgaatagaatttaacaaactaaaaacccactcgtaaaacaaacaa 51231242  T
Q  418 tataatgatttcatttccctatagttaagaaccactcccataacatcactctacacgataaatcttattgtcaaaaatgattgattcggatttaagaact 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51231243 tataatgatttcatttccctatagttaagaaccactcccataacatcactctacacgataaatcttattgtcaaaaatgattgattcggatttaagaact 51231342  T
Q  518 aacattggttctagctagaaataag 542  Q
    |||||||||||||||||||||||||    
T  51231343 aacattggttctagctagaaataag 51231367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 310
Target Start/End: Original strand, 53467030 - 53467341
Alignment:
Q  13 agaacctgtgtgaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaa 112  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53467030 agaacctttgtgattttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaa 53467129  T
Q  113 tttgacagagaaaaccacaaaaactagaggaaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtgc 211  Q
    |||||||||||| |||| | ||| ||||||||||||||||||||||||  |||| || ||||||||||||||||||||| |||||||||| |||||||||    
T  53467130 tttgacagagaagaccatacaaattagaggaaaaaatgtagaagcagaaggagatgagggtaggcagagtggagaagataaaaggtagaggttgtagtgc 53467229  T
Q  212 at-------------gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcact 298  Q
    ||             |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  53467230 atgaccctttttaaagagcaattaaatttgaagcgttgattttgatccaatgatccagattaattcctctcatcctctcattataactactcctcccact 53467329  T
Q  299 tgatatgtcctc 310  Q
    ||||||| ||||    
T  53467330 tgatatgccctc 53467341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 49308223 - 49308124
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 313  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49308223 gagcaattaaatctgaagcgttgattttgatccaatgatccaaattaattcctctcatcctctcattataactactcctctcacttgatatgccctctat 49308124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 217 - 305
Target Start/End: Complemental strand, 37915498 - 37915410
Alignment:
Q  217 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    |||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37915498 caattaaatctgaagcgttgattttgatccaatggtctagattaattcctctcatcctctcattataactactcctctcacttgatatg 37915410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 313
Target Start/End: Original strand, 49308832 - 49308889
Alignment:
Q  256 gattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 313  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  49308832 gattaattcctctcatcctctcattataactactcctctcacttgatatgccctctat 49308889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 215 - 268
Target Start/End: Original strand, 50704311 - 50704364
Alignment:
Q  215 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctct 268  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  50704311 agcaattaaatctgaagcgttgattttgatccaatggtccagattaattcctct 50704364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 1093265 - 1093175
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||| | ||||||| ||||||||| ||| ||| | || | |||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  1093265 gagcaataacatctgaaacgttgatttagatccaacggtctaaattaattcctctcatc-tctcattgtaactactcctctcacttgatatg 1093175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 305
Target Start/End: Complemental strand, 50703789 - 50703745
Alignment:
Q  261 attcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  50703789 attcctctcatcctctcattttaactactcctctcacttgatatg 50703745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 55336888 - 55336841
Alignment:
Q  257 attaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  55336888 attaaatcctcttatc-tctcattataattactcctctcacttgatatg 55336841  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 305
Target Start/End: Original strand, 51149164 - 51149195
Alignment:
Q  274 tctcattataactactcctctcacttgatatg 305  Q
    ||||||||||||||||||||||||||||||||    
T  51149164 tctcattataactactcctctcacttgatatg 51149195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 18387694 - 18387649
Alignment:
Q  259 taattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||    
T  18387694 taattcctcttatc-tctcattgtaactactcctctcatttgatatg 18387649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 20111861 - 20111923
Alignment:
Q  218 aattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 280  Q
    |||||||| |||||||| ||||| ||| ||| |||| | |||||||||||| |||||||||||    
T  20111861 aattaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 20111923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 181 - 215
Target Start/End: Original strand, 50704264 - 50704298
Alignment:
Q  181 tggagaagatgaaaggtagagattgtagtgcatga 215  Q
    ||||||||||||||||||||| |||||||||||||    
T  50704264 tggagaagatgaaaggtagaggttgtagtgcatga 50704298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 37915586 - 37915513
Alignment:
Q  144 aaaaatgtagaagcagaccgagacgag-gtaggc-agagtggagaagatgaaaggtagagattgtagtgcatga 215  Q
    ||||||| |||||||||  |||| ||| |||||| | |||||||||||||||||||| || |||||||||||||    
T  37915586 aaaaatgcagaagcagaaggagatgagcgtaggcgatagtggagaagatgaaaggtataggttgtagtgcatga 37915513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 55337600 - 55337637
Alignment:
Q  273 ctctcattataactactcctctcacttgatatgtcctc 310  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  55337600 ctctcattataattactcctctcacttgatatgccctc 55337637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 25080850 - 25080810
Alignment:
Q  273 ctctcattataactactcctctcacttgatatgtcctctat 313  Q
    |||||| |||||| ||||||||||||||||||| |||||||    
T  25080850 ctctcactataacaactcctctcacttgatatgccctctat 25080810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 26250229 - 26250201
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttg 242  Q
    |||||||||||||||||||||||||||||    
T  26250229 gagcaattaaatctgaagcgttgattttg 26250201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 51702976 - 51702669
Alignment:
Q  12 cagaacctgtgtgaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaa 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51702976 cagaacctttgtgaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaa 51702877  T
Q  112 atttgacagagaaaaccacaaaaactagaggaaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtg 210  Q
    ||||||||||||| |||||||||| ||||| |||||||||||||||||||  ||| || |||||||||||||||||||||||||||||||| ||||||||    
T  51702876 atttgacagagaagaccacaaaaattagagaaaaaaatgtagaagcagacgaagatgagggtaggcagagtggagaagatgaaaggtagaggttgtagtg 51702777  T
Q  211 cat-------------gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcac 297  Q
    |||             ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  51702776 catgaccctttttaaagagcaattaaatctgaaacgttgattttgatccaatgatccagattaattcctctcatcctctcatcataactactcctctcac 51702677  T
Q  298 ttgatatg 305  Q
    ||||||||    
T  51702676 ttgatatg 51702669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 49648192 - 49648281
Alignment:
Q  216 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||||||||||||||||||||| |||| |||| |||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  49648192 gcaattaaatctgaagcgttgatttagattaaatggtccaaattaattcctctcaccctctcattataactactcctctcacttgatatg 49648281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 311
Target Start/End: Complemental strand, 24844228 - 24844081
Alignment:
Q  177 agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaatctgaagcgttgattttgattcaatgatccagattaatt 263  Q
    ||||||||||||||||||||||||| |||||||||||||             ||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24844228 agagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaatctgaagcgttgattttgatccaatggttcagattaatt 24844129  T
Q  264 cctcttatcctctcattataactactcctctcacttgatatgtcctct 311  Q
     |||| || |||||||| || ||| ||||||||||||||||| |||||    
T  24844128 tctctcattctctcattctagctattcctctcacttgatatgccctct 24844081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 218 - 313
Target Start/End: Complemental strand, 33114176 - 33114078
Alignment:
Q  218 aattaaatctgaagcgttgattttgattcaatgatccagatta---attcctcttatcctctcattataactactcctctcacttgatatgtcctctat 313  Q
    ||||||||||||||||||||||||||| ||||| || | ||||   |||| | | ||||||||||||||  ||||||||||||||||||||||||||||    
T  33114176 aattaaatctgaagcgttgattttgatccaatggtctatattattaattcttttcatcctctcattatagttactcctctcacttgatatgtcctctat 33114078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 11380990 - 11381042
Alignment:
Q  257 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctc 310  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  11380990 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctc 11381042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 49479997 - 49479909
Alignment:
Q  215 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatat 304  Q
    |||||||||||||||| ||||||||||||| |||||||  | |||| ||  ||| || |||| |||||||||  ||||||||||||||||    
T  49479997 agcaattaaatctgaaacgttgattttgatccaatgatttaaattagtttatctcat-ctctaattataactcatcctctcacttgatat 49479909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 33114224 - 33114192
Alignment:
Q  183 gagaagatgaaaggtagagattgtagtgcatga 215  Q
    ||||||||||||||||||| |||||||||||||    
T  33114224 gagaagatgaaaggtagaggttgtagtgcatga 33114192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 33352123 - 33352163
Alignment:
Q  273 ctctcattataactactcctctcacttgatatgtcctctat 313  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  33352123 ctctcactataacaactcatctcacttgatatgtcctctat 33352163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 24 - 313
Target Start/End: Original strand, 20104825 - 20105127
Alignment:
Q  24 gaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagaga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20104825 gaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaaatttgacagaga 20104924  T
Q  124 aaaccacaaaaactagaggaaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtgcat--------- 213  Q
    | |||||||||| |||||||||||||||||||||| || |||| || ||||| |||||||||||||||||||| ||||| |||||||||||             
T  20104925 agaccacaaaaattagaggaaaaaatgtagaagca-acggagatgagggtagacagagtggagaagatgaaagatagaggttgtagtgcatgaccctttt 20105023  T
Q  214 ----gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 309  Q
        || |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||    
T  20105024 taaagaccaattaaatctgaagcgttgattttgatccaatgattcagattaattcctctcatcctctcattataactagtcctctcacttgatatgccct 20105123  T
Q  310 ctat 313  Q
    ||||    
T  20105124 ctat 20105127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Original strand, 37550955 - 37550995
Alignment:
Q  273 ctctcattataactactcctctcacttgatatgtcctctat 313  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  37550955 ctctcactataacaactcctctcacttgatatgtcctctat 37550995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 160; Significance: 5e-85; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 12 - 214
Target Start/End: Original strand, 32394751 - 32394954
Alignment:
Q  12 cagaacctgtgtgaatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaa 111  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32394751 cagaacctttgtgaatttgatggaaaaataatgaatgaattgaaaggttaaatatttatggtggctacaacaaattggttttgggtaatgaagcgtgaaa 32394850  T
Q  112 atttgacagagaaaaccacaaaaactagaggaaaaaatgtagaagcagaccgagacga-ggtaggcagagtggagaagatgaaaggtagagattgtagtg 210  Q
    |||||| |||||| |||||||||| ||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||| ||||||||    
T  32394851 atttgatagagaagaccacaaaaattagaggaaaaaatgtagaagcagacggagatgagggtaggcagagtggagaagatgaaaggtagaggttgtagtg 32394950  T
Q  211 catg 214  Q
    ||||    
T  32394951 catg 32394954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 216 - 305
Target Start/End: Complemental strand, 42848023 - 42847934
Alignment:
Q  216 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||||||||||||||||||||| ||| ||||| |||| | |||||||||| | |||||||||||||||| |||||||||||||||||    
T  42848023 gcaattaaatctgaagcgttgatttagatccaatggtccaaactaattcctctcaccctctcattataactattcctctcacttgatatg 42847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 305
Target Start/End: Complemental strand, 1677662 - 1677572
Alignment:
Q  215 agcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||||||||||||||||||||||| |||||||  | ||||||||||  | | ||||||||||| ||||||||||||||||||||||||    
T  1677662 agcaattaaatctgaagcgttgattttaattcaatagttcagattaatttttttcatcctctcattttaactactcctctcacttgatatg 1677572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 42848613 - 42848702
Alignment:
Q  216 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||||||||||||||||||||| ||||||| | |||| |||||||| ||| | |||||| |||||||||||||||| | ||||||||    
T  42848613 gcaattaaatctgaagcgttgatttagattcaacggtccaaattaattcttctcaccctctccttataactactcctctaatttgatatg 42848702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 138 - 215
Target Start/End: Original strand, 1678240 - 1678319
Alignment:
Q  138 agaggaaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga 215  Q
    |||||||||||||||||||||||   ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  1678240 agaggaaaaaatgtagaagcagaagaagatgagggtaggcgagagtggagaagatgaaaggtagaggttgtagtgcatga 1678319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 216 - 305
Target Start/End: Original strand, 45632379 - 45632467
Alignment:
Q  216 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    |||||||||||| |||||||||||| ||| ||| | |  | |||||||||||| ||| ||||||| ||||||||||||||||||||||||    
T  45632379 gcaattaaatctaaagcgttgatttagatccaacggtttaaattaattcctctcatc-tctcattgtaactactcctctcacttgatatg 45632467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 1678331 - 1678385
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctct 268  Q
    |||||||||||| | ||||||||||||||||  |||| | |||||||||||||||    
T  1678331 gagcaattaaatttaaagcgttgattttgatcaaatggttcagattaattcctct 1678385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 280
Target Start/End: Complemental strand, 30266415 - 30266349
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 280  Q
    |||||||||||||||||| |||||||| ||| ||| | || | |||||||||||| | |||||||||    
T  30266415 gagcaattaaatctgaagtgttgatttagatccaacggtctaaattaattcctctcaccctctcatt 30266349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 138 - 305
Target Start/End: Original strand, 32577238 - 32577419
Alignment:
Q  138 agaggaaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga------------gcaattaa 223  Q
    |||||||||||||||||||||||   ||| |||| ||||| ||||||||||||||||||||||||| |||||| ||||||            ||||||||    
T  32577238 agaggaaaaaatgtagaagcagaagaagatgagggtaggcgagagtggagaagatgaaaggtagaggttgtagagcatgacctttttaaagagcaattaa 32577337  T
Q  224 atctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||| |||| |||||||||||||||||||    
T  32577338 atctgaagcgttgattttgatccaatggttcagattaattcctctcatcctctcattctaacaactcctctcacttgatatg 32577419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 138 - 309
Target Start/End: Original strand, 12294138 - 12294324
Alignment:
Q  138 agaggaaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaatta 222  Q
    |||||||||||||||||||||||  |||| |||| ||||| ||||||||||||||||||  ||||| |||||||||||||             |||||||    
T  12294138 agaggaaaaaatgtagaagcagaaggagatgagggtaggcgagagtggagaagatgaaaaatagaggttgtagtgcatgatcctttttaaagagcaatta 12294237  T
Q  223 aatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 309  Q
    ||| |||||||||||||||||| ||||| | ||||||||||| ||| |||||||||||  || ||||||||||||||||||||||||    
T  12294238 aatatgaagcgttgattttgatccaatggttcagattaattcatctcatcctctcatttaaattactcctctcacttgatatgtcct 12294324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 217 - 313
Target Start/End: Complemental strand, 12293556 - 12293460
Alignment:
Q  217 caattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 313  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||  |  |||||||||||||||||||| |||||||    
T  12293556 caattaaatctgaagcgttgattttgatccaatgatccagattaatttctctcatcctctcatttaagttactcctctcacttgatatgccctctat 12293460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 216 - 312
Target Start/End: Complemental strand, 42745725 - 42745629
Alignment:
Q  216 gcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctcta 312  Q
    ||||||||||||||||||||||||| ||| ||| | |||| |||||||||||| ||||||| |||||||||||| ||||||||||||||| ||||||    
T  42745725 gcaattaaatctgaagcgttgatttagatccaacggtccaaattaattcctctcatcctcttattataactactactctcacttgatatgccctcta 42745629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 144 - 311
Target Start/End: Complemental strand, 9146242 - 9146060
Alignment:
Q  144 aaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcat-------------gagcaattaaatctg 228  Q
    |||||||||||||||||  |||| |||| ||||  ||||||||||||||||||||||||| |||||||| ||             || ||||||||||||    
T  9146242 aaaaatgtagaagcagaaggagatgagggtaggggagagtggagaagatgaaaggtagaggttgtagtgaatgaccctttttaaagaacaattaaatctg 9146143  T
Q  229 aagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcctct 311  Q
    |||||||||||||||| |||   |||| |||||||||||| ||||||||||||||| ||| |||||||||||||||| |||||    
T  9146142 aagcgttgattttgatccaaatgtccaaattaattcctctcatcctctcattataattacacctctcacttgatatggcctct 9146060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 262 - 305
Target Start/End: Complemental strand, 7831678 - 7831635
Alignment:
Q  262 ttcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  7831678 ttcctctcatcctctcattataactactcctctcacttgatatg 7831635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 32576690 - 32576627
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctca 278  Q
    |||||||||||| ||||||||||||||| ||||||||  |||||||||||| ||| |||||||||    
T  32576690 gagcaattaaatttgaagcgttgattttaattcaatg-gccagattaattcttctcatcctctca 32576627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 218 - 309
Target Start/End: Original strand, 23689 - 23780
Alignment:
Q  218 aattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtcct 309  Q
    ||||||||||||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  23689 aattaaatctgaagcgttgattttgatccaatgatctatattaattcctctcatcctctcattataactactactctcacttgatatgtcct 23780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 23641 - 23673
Alignment:
Q  183 gagaagatgaaaggtagagattgtagtgcatga 215  Q
    ||||||||||||||||||| |||||||||||||    
T  23641 gagaagatgaaaggtagaggttgtagtgcatga 23673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 10951691 - 10951809
Alignment:
Q  25 aatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaaaatttg 116  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||        | |||||||||||||||||||||||||    
T  10951691 aatttgattgaaaaatagtgaaagaattgaaaggttaaatattaatggtggctacaacaaattggtgttggactgttgggtaatgaagcgtgaaaatttg 10951790  T
Q  117 acagagaaaaccacaaaaa 135  Q
    |||||||| |||| |||||    
T  10951791 acagagaagaccataaaaa 10951809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 140 - 304
Target Start/End: Original strand, 210317 - 210496
Alignment:
Q  140 aggaaaaaatgtagaagcagaccgagacgagg-taggc-agagtggagaagatgaaaggtagagattgtagtgcatga-------------gcaattaaa 224  Q
    ||||||||| |||||||||||  |||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||             |||||||||    
T  210317 aggaaaaaacgtagaagcagaaggagatgagggtaggcgagagtggagaagatgaaaggtagaggttgtagtgcatgaccctttttaaagagcaattaaa 210416  T
Q  225 tctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatat 304  Q
    ||| |||||||||||||||| ||||| ||||||||||||||| | ||||||||||| |||||||| |||||| |||||||    
T  210417 tctaaagcgttgattttgatccaatggtccagattaattcctttcatcctctcattctaactacttctctcatttgatat 210496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 41609600 - 41609509
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatg 305  Q
    |||||||||||||||| |||||||||||||| ||||| | || |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41609600 gagcaattaaatctgatgcgttgattttgatccaatggttcaaattaattcctctcatcctctcattataactactcctctcacttgatatg 41609509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 14098382 - 14098475
Alignment:
Q  214 gagcaattaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcattataactactcctctcacttgatatgtc 307  Q
    ||||||||||||||||||||||||||||| | ||||| |||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||    
T  14098382 gagcaattaaatctgaagcgttgattttgttccaatggtccaaattaattcctgtcatcctctcattgtaactactcctctcacttgatatgtc 14098475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 4084398 - 4084280
Alignment:
Q  25 aatttgattgaaaaatagtgaatgaattgaaaggttaaatatttatggtggctacaacaaattgg--------ttttgggtaatgaagcgtgaaaatttg 116  Q
    ||||||||||| ||| |||||| |||||||||||||||||||| || ||||||||||||||||||        | |||||||||||||||||||||||||    
T  4084398 aatttgattgacaaaaagtgaaagaattgaaaggttaaatattaatcgtggctacaacaaattggtgttggactcttgggtaatgaagcgtgaaaatttg 4084299  T
Q  117 acagagaaaaccacaaaaa 135  Q
    ||| |||| |||| |||||    
T  4084298 acaaagaagaccataaaaa 4084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 29630440 - 29630386
Alignment:
Q  257 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctcta 312  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  29630440 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctcta 29630386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 305
Target Start/End: Complemental strand, 14098342 - 14098307
Alignment:
Q  270 atcctctcattataactactcctctcacttgatatg 305  Q
    |||||||||||||||||||||||||| |||||||||    
T  14098342 atcctctcattataactactcctctctcttgatatg 14098307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 257 - 313
Target Start/End: Complemental strand, 51097564 - 51097509
Alignment:
Q  257 attaattcctcttatcctctcattataactactcctctcacttgatatgtcctctat 313  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  51097564 attaattcctctcatc-tctcattataactactcctctcacttgatatgtcctctat 51097509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 36930179 - 36930227
Alignment:
Q  262 ttcctcttatcctctcattataactactcctctcacttgatatgtcctc 310  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| ||||    
T  36930179 ttcctctcatcctctcattataactacttctctcacttgatatgccctc 36930227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 36681562 - 36681522
Alignment:
Q  273 ctctcattataactactcctctcacttgatatgtcctctat 313  Q
    |||||| |||||| |||||||||||||||||||||||||||    
T  36681562 ctctcactataacaactcctctcacttgatatgtcctctat 36681522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 43250920 - 43250883
Alignment:
Q  262 ttcctcttatcctctcattataactactcctctcactt 299  Q
    ||||||| ||||||||||||||| ||||||||||||||    
T  43250920 ttcctctcatcctctcattataattactcctctcactt 43250883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 280
Target Start/End: Original strand, 18970615 - 18970675
Alignment:
Q  220 ttaaatctgaagcgttgattttgattcaatgatccagattaattcctcttatcctctcatt 280  Q
    |||||| |||||||| ||||| ||| ||| |||| | |||||||||||| |||||||||||    
T  18970615 ttaaatttgaagcgtcgatttagatccaacgatcaaaattaattcctctcatcctctcatt 18970675  T

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