View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_low_18 (Length: 510)

Name: NF2749_low_18
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_low_18
NF2749_low_18
[»] chr2 (2 HSPs)
chr2 (18-500)||(4956416-4956898)
chr2 (130-217)||(45268273-45268360)
[»] chr8 (2 HSPs)
chr8 (18-453)||(35828004-35828442)
chr8 (157-266)||(24948025-24948133)
[»] chr7 (2 HSPs)
chr7 (38-229)||(40353920-40354107)
chr7 (110-142)||(43305814-43305846)
[»] chr1 (1 HSPs)
chr1 (157-266)||(25347328-25347436)
[»] chr3 (1 HSPs)
chr3 (110-228)||(27312203-27312321)
[»] chr5 (3 HSPs)
chr5 (157-266)||(19351148-19351256)
chr5 (107-252)||(31892668-31892813)
chr5 (129-265)||(31903896-31904032)
[»] chr6 (1 HSPs)
chr6 (157-266)||(12853423-12853531)
[»] chr4 (2 HSPs)
chr4 (104-217)||(54659647-54659760)
chr4 (110-142)||(44721141-44721173)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 4956898 - 4956416
Alignment:
Q  18 atcttaagcctgaaaatttgttgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956898 atcttaagcctgaaaatttgttgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggttt 4956799  T
Q  118 gtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956798 gtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgtt 4956699  T
Q  218 gttttgtttgttttgatggctggttatttaccttttcatgatcaaaatgttatggcaatgtataagaaaatttacaagggtgagtttcggtgtcctaggt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  4956698 gttttgtttgttttgatggctggttatttaccttttcatgatcaaaatgttatggcaatgtataagaagatttacaagggtgagtttcggtgtcccaggt 4956599  T
Q  318 ggttttcaccagatttatcgaaactgcttgttcgtcttcttgatactaagcctgaaactaggattgcaatacctgatattatggagaataggtggtttaa 417  Q
    |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4956598 ggttttcaccggacttatcaaaactgcttgttcgtcttcttgatactaagcctgaaactaggattgcgatacctgatattatggagaataggtggtttaa 4956499  T
Q  418 aaaagggttcaaacagattaagttttatgttgaggacgacaggctttgtaatgtcgatgatggttttggtgacaatgatgatg 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956498 aaaagggttcaaacagattaagttttatgttgaggacgacaggctttgtaatgtcgatgatggttttggtgacaatgatgatg 4956416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 45268360 - 45268273
Alignment:
Q  130 ttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgtt 217  Q
    |||||| ||||||||||||||||||||||| ||||||   | ||  |||||||||||  |||| | |||| |||||||||||||||||    
T  45268360 ttgtgggactcctgcttatgttgcacctgaagttttgaagaagattggttatgatggatcaaaagctgatatttggtcttgtggtgtt 45268273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 453
Target Start/End: Original strand, 35828004 - 35828442
Alignment:
Q  18 atcttaagcctgaaaatttgttgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggttt 117  Q
    |||| |||||||||||||||||||||||||| || |||||  | ||||| || ||||||||| | |||||||| || ||| ||||||  |||||||| ||    
T  35828004 atctaaagcctgaaaatttgttgcttgatgaaaaaggtaaccttaaagtttcagattttggtcttagtgctgtgtcggatgaaattaagcaagatgggtt 35828103  T
Q  118 gtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgtt 217  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||    
T  35828104 gtttcatactttttgtggtacacctgcttatgttgctcctgaggttttgtctaggaaaggttatgatggtgctaaggttgatatttggtcttgtggggtt 35828203  T
Q  218 gttttgtttgttttgatggctggttatttaccttttcatgatc---aaaatgttatggcaatgtataagaaaatttacaagggtgagtttcggtgtccta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||   | ||||||||||| ||||||||||| ||||| || ||||| ||| |||||||||    
T  35828204 gttttgtttgttttgatggctggttatttaccttttcatgatcctaataatgttatggctatgtataagaagatttataaaggtgaatttaggtgtccta 35828303  T
Q  315 ggtggttttcaccagatttatcgaaactgcttgttcgtcttcttgatactaagcctgaaactaggattgcaatacctgatattatggagaataggtggtt 414  Q
    | ||||||||||||||  |    |  || |||  | | |||||||||| ||| ||| ||||||||||| | || ||||| |||||||||||| | |||||    
T  35828304 gatggttttcaccagaacttgttagtcttcttactaggcttcttgatattaaacctcaaactaggatttctattcctgagattatggagaatcgttggtt 35828403  T
Q  415 taaaaaagggttcaaacagattaagttttatgttgagga 453  Q
    ||| | ||| || || || ||||| ||||||||||||||    
T  35828404 taagataggttttaagcatattaaattttatgttgagga 35828442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 24948025 - 24948133
Alignment:
Q  157 tgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgttttgatggctggttatttaccttttcat 256  Q
    ||||||||||| |||  | | |||||||||| | |||||||||||||| |||||||||||| |||||||| |||||||| || ||||||| |||||| ||    
T  24948025 tgaggttttggttagttatgtttatgatggtactaaggttgatctttgatcttgtggtgttattttgtttcttttgatgacttgttatttgcctttt-at 24948123  T
Q  257 gatcaaaatg 266  Q
    ||||||||||    
T  24948124 gatcaaaatg 24948133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 40354107 - 40353920
Alignment:
Q  38 ttgcttgatgagaatggtaatttgaaagtgtctgattttggtttgagtgctgtttctgatcaaattagacaagatggtttgtttcatactttttgtggta 137  Q
    ||||||||||| ||| ||||||||||| | |||||||||||||| |||  || |||| |||||||||||||||||||| |||||| |||||||||| |||    
T  40354107 ttgcttgatgataattgtaatttgaaactttctgattttggtttaagtattgcttctcatcaaattagacaagatggtctgtttcttactttttgttgta 40354008  T
Q  138 ctcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgtt 229  Q
    ||||    |||||| | | ||| ||||||| |||  || |||| |||||| | |||||||||||||||| ||||| |||| |||||||||||    
T  40354007 ctcc----tatgttactcatgaagttttggttagttaaagttacgatggtactaaggttgatctttggttttgtgttgttattttgtttgtt 40353920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 43305814 - 43305846
Alignment:
Q  110 gatggtttgtttcatactttttgtggtactcct 142  Q
    ||||||||||||| |||||||||||||||||||    
T  43305814 gatggtttgtttcttactttttgtggtactcct 43305846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 25347328 - 25347436
Alignment:
Q  157 tgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgttttgatggctggttatttaccttttcat 256  Q
    ||||||||||| |||  | | |||||||||| | |||||||||||||| |||||||||||| |||||||| |||||||| || ||||||| |||||| ||    
T  25347328 tgaggttttggttagttatgtttatgatggtactaaggttgatctttgatcttgtggtgttattttgtttcttttgatgacttgttatttgcctttt-at 25347426  T
Q  257 gatcaaaatg 266  Q
    ||||||||||    
T  25347427 gatcaaaatg 25347436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 27312321 - 27312203
Alignment:
Q  110 gatggtttgtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtctt 209  Q
    ||||| ||| |||||||| ||||||| || |||||||| || |||||||||||| | |||| |  ||| ||||||||||| || |||||| ||||||| |    
T  27312321 gatggattgcttcatactctttgtggaacccctgcttacgtggcacctgaggttcttgctaagcgaggatatgatggtgccaaagttgatgtttggtcat 27312222  T
Q  210 gtggtgttgttttgtttgt 228  Q
    |||| ||||||||||||||    
T  27312221 gtggcgttgttttgtttgt 27312203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 266
Target Start/End: Original strand, 19351148 - 19351256
Alignment:
Q  157 tgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgttttgatggctggttatttaccttttcat 256  Q
    ||||||||||| |||  | | |||||||||| | || ||||||||||| |||||||||||| |||||||| |||||||| || ||||||| |||||| ||    
T  19351148 tgaggttttggttagttatgtttatgatggtactaatgttgatctttgatcttgtggtgttattttgtttcttttgatgacttgttatttgcctttt-at 19351246  T
Q  257 gatcaaaatg 266  Q
    ||||||||||    
T  19351247 gatcaaaatg 19351256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 107 - 252
Target Start/End: Original strand, 31892668 - 31892813
Alignment:
Q  107 caagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggt 206  Q
    |||||||||||||| |||||   |||||| ||||||||||||||||| ||||| ||  |    ||||| |||||||||||| | || | |||| ||||||    
T  31892668 caagatggtttgttgcatacaacttgtggaactcctgcttatgttgctcctgaagtgatcaaaaggaagggttatgatggttccaaagctgatatttggt 31892767  T
Q  207 cttgtggtgttgttttgtttgttttgatggctggttatttaccttt 252  Q
    ||||||| |||||| | ||||||||  | ||||||||| |||||||    
T  31892768 cttgtggagttgttctttttgttttacttgctggttatgtaccttt 31892813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 265
Target Start/End: Complemental strand, 31904032 - 31903896
Alignment:
Q  129 tttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgt 228  Q
    ||||||| || ||||| ||||| ||||| ||| |||| || | || |||||||||||| || ||||| ||| ||||||| |||||| || |  |||||||    
T  31904032 tttgtggaacacctgcatatgtggcaccggagattttagcgaagagaggttatgatggagctaaggtggatatttggtcatgtggtattatactgtttgt 31903933  T
Q  229 tttgatggctggttatttaccttttcatgatcaaaat 265  Q
    | |  ||||||||||| | || ||| |||||| ||||    
T  31903932 tcttgtggctggttatcttccatttaatgatccaaat 31903896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 157 - 266
Target Start/End: Complemental strand, 12853531 - 12853423
Alignment:
Q  157 tgaggttttggctaggaaaggttatgatggtgcaaaggttgatctttggtcttgtggtgttgttttgtttgttttgatggctggttatttaccttttcat 256  Q
    ||||||||||| |||  | | |||||||||| | |||||||||||||| | |||||||||| |||| ||| |||||||| || ||||||| |||||| ||    
T  12853531 tgaggttttggttagttatgtttatgatggtactaaggttgatctttgatgttgtggtgttattttctttcttttgatgacttgttatttgcctttt-at 12853433  T
Q  257 gatcaaaatg 266  Q
    ||||||||||    
T  12853432 gatcaaaatg 12853423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 54659647 - 54659760
Alignment:
Q  104 agacaagatggtttgtttcatactttttgtggtactcctgcttatgttgcacctgaggttttggctaggaaaggttatgatggtgcaaaggttgatcttt 203  Q
    ||||||||||| ||||| |||||    ||||||||||| || |||||| | || |||||| | || | ||| ||||| || ||||| |||| |||| |||    
T  54659647 agacaagatggattgttgcataccacatgtggtactccggcgtatgtttcgccggaggttatcgcgaagaagggttacgacggtgctaaggctgatattt 54659746  T
Q  204 ggtcttgtggtgtt 217  Q
    ||||||||||||||    
T  54659747 ggtcttgtggtgtt 54659760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 44721173 - 44721141
Alignment:
Q  110 gatggtttgtttcatactttttgtggtactcct 142  Q
    ||||||||||||| |||||||||||||||||||    
T  44721173 gatggtttgtttcttactttttgtggtactcct 44721141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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