View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_19 (Length: 495)
Name: NF2749_low_19
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 18028524 - 18028086
Alignment:
| Q |
18 |
atagaagaaatcaaaatcatcagaaagacattgaattgatagatattgaagtaccaaaagcttgaacaaaaatgaaatgctgttgagtttcattttatta |
117 |
Q |
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| T |
18028524 |
atagaagaaatcaaaatcatcagaaagacattgaattgatagatattgaagtatcaaaagcttgaacaaaaatgaaatgctgttgagtttcattttatta |
18028425 |
T |
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| Q |
118 |
tgttttttgaatttcacaagcaaaagaaactaatgaatgatgttgatgttaaactcagaagtggtgttacgtatatatagtggaaagatgttgagcttat |
217 |
Q |
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| T |
18028424 |
tgttttttgaatttcacaagcaaaagaaactaatgaatgatgttgatattaaactcagaagtggtgttacgtatatatagtggaaagatgttgagcttat |
18028325 |
T |
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| Q |
218 |
aaggcatgtcaaagaaatacgtaaaccaatcgtaaactagtttacaatcnnnnnnnncaaatataataataatgtgaagtactttgcattattaaaagag |
317 |
Q |
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| T |
18028324 |
aaggcatgtcaaagaaatacgtaaaccaatcgtaaactagtttacaatcttttttttcaaatataataata---tgaagtactttgcattattaaaaaag |
18028228 |
T |
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| Q |
318 |
tttatgtttat-cacacatttaataaatgaataccacaacttgctttgaagtttccattggatttttaatccttttaattaataaaagagatgtttatct |
416 |
Q |
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|||| |||||| || | |||||||| |||||||||||||||||||||||||| |||||||| |||| | | ||| |||||||||||||| |
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| T |
18028227 |
tttaggtttatccataaatttaata----aataccacaacttgctttgaagtttctattggatt--------atttattaactaacagagatgtttatct |
18028140 |
T |
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| Q |
417 |
attttttacaatgatgtacagatcataagtgtgaatttaagatttcatctaaac |
470 |
Q |
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| T |
18028139 |
attttttacaatgatgtacaaatcataagtctgaatttaagatttcatctaaac |
18028086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 18034387 - 18034278
Alignment:
| Q |
18 |
atagaagaaatcaaaatcat---cagaaagacattgaattgatagatattgaagtaccaaaagcttgaacaaaaatgaaatgctgttgagtttcatttta |
114 |
Q |
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|||||||||||||||||| | ||||||| ||||||| || ||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
18034387 |
atagaagaaatcaaaatcctgagcagaaaggcattgaacagaaagatattgaagtattaaaagcttggacaaaaatgaaatgctgctgagtttcattttc |
18034288 |
T |
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| Q |
115 |
ttatgttttt |
124 |
Q |
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||||| |||| |
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| T |
18034287 |
ttatgctttt |
18034278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 123
Target Start/End: Complemental strand, 18052130 - 18052046
Alignment:
| Q |
39 |
agaaagacattgaattgatagatattgaagtaccaaaagcttgaacaaaaatgaaatgctgttgagtttcattttattatgtttt |
123 |
Q |
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|||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||||| | | ||||||||| ||||||||| |
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| T |
18052130 |
agaaaggcattgaaaagatagatattgaagtattaaaagcttggacaaaaatgaaatgctgcttaatttcattttcttatgtttt |
18052046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 442 - 472
Target Start/End: Complemental strand, 214448 - 214418
Alignment:
| Q |
442 |
taagtgtgaatttaagatttcatctaaacta |
472 |
Q |
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| T |
214448 |
taagtgtgaatttaagatttcatctaaacta |
214418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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