View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_low_2 (Length: 707)
Name: NF2749_low_2
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 260 - 681
Target Start/End: Complemental strand, 36956557 - 36956136
Alignment:
| Q |
260 |
gtacaaaaataatcaaagattata----actctgatatacgagacggcaaagcactttaggtgataggccacgaatcgaggcatctgataatggggacag |
355 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||| ||||| ||| | |
|
|
| T |
36956557 |
gtacaaaaataatcaaagactatatataactctgatatacgagacggcaaagcactttaggtgataggccttgaaccgaggcacctgacaatggagactg |
36956458 |
T |
|
| Q |
356 |
ttggggtgtcgatca--atctaacaatcatcaatatgttgaatgtgtgaagacatatattgttggccgtagtgatccatatcgaaaatgatggaggtaat |
453 |
Q |
| |
|
||| |||||| |||||||||||| | || |||||||||||| || ||| |||||||||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
36956457 |
ttg-----tcgatcttgatctaacaatcaacgatgtgttgaatgtgtaaatgcatgtattgttggccgcagtgatctatatccaaaatgatggaggtaat |
36956363 |
T |
|
| Q |
454 |
gtagcaaaatagtgttgtggtggtgacaattggcaatttgagtactagtgcaccatttattttaactgtgtaacataaactaaacctatcatcactattt |
553 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| | ||||||| |
|
|
| T |
36956362 |
gtagcaaaatagtgttgtggtggtgacaattggcaatttgagtactagtgcaccattt-ttttaattgtgtaacataaactaaacctatagttactattt |
36956264 |
T |
|
| Q |
554 |
aaaacttnnnnnnnnnnnncttgctatgacgtgaaagatgtgctagcttcctatttatgtattttcccctgcaaatagttgagattccttgacagcaatt |
653 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36956263 |
aaaatttaaaaataaaaaacttgctatgacgtgaaagatgtgctagcttcctatttatgtattttcccctgcaaatagttgagattccttgacagcaatt |
36956164 |
T |
|
| Q |
654 |
tggattcaaattagtcattatttggatg |
681 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
36956163 |
tggattcaaattagtcattatttggatg |
36956136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 36956792 - 36956587
Alignment:
| Q |
13 |
caaaggcaccaaaattgggaatattaaagcttccatttctctctataataa-----------------agttttggaataaaggaaaacttgagaattga |
95 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |
|
|
| T |
36956792 |
caaaggcaccaaaattgggtatattaaagcttccatttctctctataacaataaagtggctaaaggtcagttttggaataaaggaacacttgagaattga |
36956693 |
T |
|
| Q |
96 |
ttcccttagctattttctttttactgtcctaagaaccttgcactgtatgtgcaacggattcttgactggtcttagttcctctacatctacttaataactt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36956692 |
ttcccttagctattttctttttactgtcctaagaaccttgcactgtttgtgaaacggattcttgactggtcttagttcctctacatctacttaataaatt |
36956593 |
T |
|
| Q |
196 |
agaaag |
201 |
Q |
| |
|
|||||| |
|
|
| T |
36956592 |
agaaag |
36956587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University