View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_low_21 (Length: 456)
Name: NF2749_low_21
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 11 - 440
Target Start/End: Complemental strand, 36371369 - 36370940
Alignment:
| Q |
11 |
cagagaatgggaacttgtggaaaggatattcctctggagactcaattcatgcttatagagagcaaagatagtgaagaggaagggaaaaattctcccatcg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36371369 |
cagagaatgggaacttgtggaaaggatattcctctggagactcaattcatgcttatagagagcaaagatagtgaagaggaagggaaaaattctcccatcg |
36371270 |
T |
|
| Q |
111 |
tctacactgtcttgcttcctctattgggaggtccattccgatctgttctacaaggcaatgagaaaagcgagattgaggtctgcttcgagagcggtgagta |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36371269 |
tctacactgtcttgcttcctctattggaaggtccattccgatctgttctacaaggcaatgagaaaagcgagattgagatctgcttcgagagcggtgagta |
36371170 |
T |
|
| Q |
211 |
actctttatcatgcgaaaaacggtttagtgtaggctacatgagacttataatttagttatgtttactgttaaattcagttccttccggtctgccataatt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36371169 |
actctttatcatgcgaaaaacggtttagtgtaggctacatgagacttataatttagttatgtttactgttaaattcagttccttccggtctgccataatt |
36371070 |
T |
|
| Q |
311 |
tgtggggtggagctgtcattaatgcgaatagaattggggctggataatcttcaatcaattgaatcaaacaaatggagtttatagctttggagaaaatata |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36371069 |
tgtggggtggagctgtcattaatgcgaatagaattggggctggataatcttcaatcaattgaatcaaacaaatggagtttatagctttggagaaaatata |
36370970 |
T |
|
| Q |
411 |
tataaggtggtatcccaatcaaactccttt |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
36370969 |
tataaggtggtatcccaatcaaactccttt |
36370940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 21377704 - 21377558
Alignment:
| Q |
18 |
tgggaacttgtggaaaggatattcctctggagactcaattcatgcttatagagagcaaagatagtgaagaggaagggaaaaattctcccatcgtctacac |
117 |
Q |
| |
|
||||||||||||| | |||||| ||| ||||||| ||||||||||||||||||| |||||| ||| ||||||||||| || | ||||| |
|
|
| T |
21377704 |
tgggaacttgtgggagggatatccctttggagacccaattcatgcttatagagatcaaagaaagt------------aaaaattctccagtcatttacac |
21377617 |
T |
|
| Q |
118 |
tgtcttgcttcctctattgggaggtccattccgatctgttctacaaggcaatgagaaaa |
176 |
Q |
| |
|
|||||| ||||||||| ||| ||||| |||||| | || |||||||||||||| |||| |
|
|
| T |
21377616 |
tgtcttacttcctctactggaaggtcaattccgtgcggtcctacaaggcaatgacaaaa |
21377558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University