View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_22 (Length: 450)
Name: NF2749_low_22
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 171 - 435
Target Start/End: Original strand, 43156832 - 43157103
Alignment:
| Q |
171 |
cgtcaaagtcgctcataactccaaaattccacggaaaaagtccaaggaatatgacatat-------agaaaataatacctttctatggtttcacatccta |
263 |
Q |
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| T |
43156832 |
cgtcaaagtcgctcataactccaaaattccacggaaaaagtccaaggaatatgacatatgatatatagaaaataatacctttctatggtttcacatccta |
43156931 |
T |
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| Q |
264 |
ttttacttttatttctccccttaagttggaaaatacacaaatgtgtaacatgggtttgttttgtggtgaggatagttggaaattagcgagtatttatctt |
363 |
Q |
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| T |
43156932 |
ttttacttttatttctccccttaagttggaaaatacacaaatgtgtaacatgggtttgttttgtggtgaggatagttggaaattagcgagtatttatctt |
43157031 |
T |
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| Q |
364 |
gttattccacactcatttttgtttttatgcttcatggcaagtcttcatggtccatccccaaacgtagtttct |
435 |
Q |
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| T |
43157032 |
gttattccacactcatttttgtttttatgcttcatggcaagtcttcatggtccatccccaaacgtagtttct |
43157103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 43156678 - 43156760
Alignment:
| Q |
17 |
tatcaaacttaaacaaccacattgccaatttttgtgtggagtagagcacaaggaaatttagaatatgctcatcatgagaatac |
99 |
Q |
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| T |
43156678 |
tatcaaacttaaacaaccacattgccaatttttgtgtggagtagagcacaaggaaatttagaatatgctcattatgaaaatac |
43156760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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