View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_23 (Length: 444)
Name: NF2749_low_23
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 15 - 433
Target Start/End: Complemental strand, 23128146 - 23127726
Alignment:
| Q |
15 |
agatttcatggtgttgacaggttgtcggcctcggaaaaggcccaccaagaggcccagagttgttcagaaagagttagacgttagttgcatgttt-ccctt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23128146 |
agatttcatggtgttgacaggttgtcggcctcggaaaaggcccaccaagaggcccagagttgttcagaaagagttagacgttagttgcatgttttccctt |
23128047 |
T |
|
| Q |
114 |
ttaatgaataattaatctctcaatatattactgcttttgtttaatttatcattgataataaatacctaatttgtttttactgttttgcagaatgtttttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128046 |
ttaatgaataattaatctctcaatatattactgcttttgtttaatttatcattgataataaatacctaatttgtttttactgttttgcagaatgtttttc |
23127947 |
T |
|
| Q |
214 |
ctggattgtgtctaagtgatgttaatgctgaaaagtacaaggttcatgatacaaatcagaatgagagatctgcaaagaggaaagggaaaaggaagtgttt |
313 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23127946 |
ctggattgtggctaagtgatgttaatgctgaaaagtacaaggttcatgatacaaatcagaatgagagatctgcgaagaggaaagggaaaaggaagtgttt |
23127847 |
T |
|
| Q |
314 |
tgatgatgaagaatcatcatattaggttttttgttttgattctcaatc-ttgagatggtgctaatattaggttttttgatagatataatatggttggttc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23127846 |
tgatgatgaagaatcatcatattaggttttttgttttgattctcaatctttgggatggtgctaatattaggttttttgatagatataatattgttggttc |
23127747 |
T |
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| Q |
413 |
attcttttgtttactagaata |
433 |
Q |
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|||||||||||||| |||||| |
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| T |
23127746 |
attcttttgtttacaagaata |
23127726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 322
Target Start/End: Complemental strand, 23096275 - 23096149
Alignment:
| Q |
196 |
ttttgcagaatgtttttcctggattgtgtctaagtgatgttaatgctgaaaagtacaaggttcatgatacaaatcagaatgagagatctgcaaagaggaa |
295 |
Q |
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||||||||||| |||||||||||||||| |||| || ||||||| |||| ||| ||||||| |||||||||||||||| || ||||| |||||||| |
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| T |
23096275 |
ttttgcagaatatttttcctggattgtggttaagagaagttaatgaagaaatgtatgaggttcaagatacaaatcagaatgggaaatctgggaagaggaa |
23096176 |
T |
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| Q |
296 |
agggaaaaggaagtgttttgatgatga |
322 |
Q |
| |
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|||| |||||| || || |||||||| |
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| T |
23096175 |
agggttaaggaattggttggatgatga |
23096149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 23096130 - 23096070
Alignment:
| Q |
362 |
ttgagatggtgctaatattagg--ttttttgatagatataatatggttggttcattctttt |
420 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| |
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| T |
23096130 |
ttgagatggtgctaatattagggttttttttatagatataatatggttagttcattctttt |
23096070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 196 - 296
Target Start/End: Complemental strand, 23072137 - 23072037
Alignment:
| Q |
196 |
ttttgcagaatgtttttcctggattgtgtctaagtgatgttaatgctgaaaagtacaaggttcatgatacaaatcagaatgagagatctgcaaagaggaa |
295 |
Q |
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||||| |||| ||||| |||||| |||| |||| || |||| |||||||| |||| |||||||||||||||||||||||| ||||| || |||||||| |
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| T |
23072137 |
ttttgtagaaggttttccctggactgtggttaagagaggttactgctgaaatgtacgaggttcatgatacaaatcagaatgggagatttgggaagaggaa |
23072038 |
T |
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| Q |
296 |
a |
296 |
Q |
| |
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| |
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|
| T |
23072037 |
a |
23072037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 23071967 - 23071906
Alignment:
| Q |
362 |
ttgagatggtgctaatattagg---ttttttgatagatataatatggttggttcattctttt |
420 |
Q |
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|||||||||||||| ||||||| |||||| |||||||| |||||||| |||||||||||| |
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| T |
23071967 |
ttgagatggtgctattattagggtttttttttatagatattatatggttagttcattctttt |
23071906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 196 - 328
Target Start/End: Complemental strand, 6963681 - 6963549
Alignment:
| Q |
196 |
ttttgcagaatgtttttcctggattgtgtctaagtgatgttaatgctgaaaagtacaaggttcatgatacaaatcagaatgagagatctgcaaagaggaa |
295 |
Q |
| |
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|||||||||||||||| ||||||||||| |||| || ||||||||||||| ||| |||||| |||| ||||||| ||| ||||||||| |||||||| |
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| T |
6963681 |
ttttgcagaatgttttccctggattgtggttaagggaggttaatgctgaaatgtatgaggttcttgatgcaaatcaaaataggagatctgcgaagaggaa |
6963582 |
T |
|
| Q |
296 |
agggaaaaggaagtgttttgatgatgaagaatc |
328 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
6963581 |
cgggaaagggaagtgttttgatgatgaagaatc |
6963549 |
T |
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