View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_24 (Length: 433)
Name: NF2749_low_24
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 45666478 - 45666256
Alignment:
| Q |
18 |
acctgctcctttagcagctgcattgtggataagggtgaatcctacgagaagaggatttccattaccctcctcaagaaaggatgttgcatgttcatgagcc |
117 |
Q |
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| T |
45666478 |
acctgctcctttagcagctgcattgtgaacaagggtgagtcctacgagaagaggatttccattaccctcctcaagaaaggatgctgcatgttcatgagcc |
45666379 |
T |
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| Q |
118 |
tctaacagaaagagttcttcggtttcattgaagaagtgatgttgttgaccataaaccaagttgatgataacaagtcctattgcaatgaaaagccagaaat |
217 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45666378 |
tctaacagaaagagttcttcagtttcattgaagaagtgatgttgttgaccataaaccaagttgatgataacaagtcctattgcaatgaaaagccagaaaa |
45666279 |
T |
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| Q |
218 |
gtttagccattggcgatgacaat |
240 |
Q |
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| T |
45666278 |
gtttagccattggcgatgacaat |
45666256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 306 - 425
Target Start/End: Complemental strand, 45666240 - 45666117
Alignment:
| Q |
306 |
ctatattaacgtgaacaaaggaaatttaggaggtgattaaggaaagaggtac-----aaagatatataaggcaaagnnnnnnngtggcaccgggcgggct |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
45666240 |
ctatattaatgtgaacaaaggaaatttaggaggtgattaagg-aagaggtacaaagtaaagatatataaggcaaagaaaaaaagtggcaccgggcgggct |
45666142 |
T |
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| Q |
401 |
tctttcaagttttattagtattatc |
425 |
Q |
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||||||||||||||||| ||||||| |
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| T |
45666141 |
tctttcaagttttattattattatc |
45666117 |
T |
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