View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_low_25 (Length: 428)
Name: NF2749_low_25
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 46471005 - 46471363
Alignment:
| Q |
19 |
agtttggcttaagaatggcatggtctctgaaaataactctaggcatggaagccattgattattagacgagaaaaggggtttgagtttgaaaagggtttat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46471005 |
agtttggcttaagaatggcatggtctctgaaaataactctaggcatggaagccattgattattagacgagaaaaggggtttgagtttgaaaagggtttat |
46471104 |
T |
|
| Q |
119 |
gaatattcaagaatgagtgagtagggaaattagagtgtgggaatctgaaattgaaaatgagagtgacaagtttgtttgggtgttagtgaagaattattat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46471105 |
gaatattcaagaatgagtgagtagggaaattagagtgtgggaatctgaaattgaaaatgagagtgacaagttt----gggtgttagtgaagaattattat |
46471200 |
T |
|
| Q |
219 |
tgaagatgaatgtcgtgaaaaacaatatgaaccacaaacgactctgcaaatatcttaaaccatatcttttccttacactttcaagccagcctggactcga |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46471201 |
tgaagatgaatgtcgtgaaaaacaatatgaaccacaaacgactctgcaaatatcttaaaccatatcttttccttacactttcaagccagcctggactcga |
46471300 |
T |
|
| Q |
319 |
cgagtatacgaatcaatttcccctcaaccgtttttctaatatttgactttcatcttcacctta |
381 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
46471301 |
cgagtatacgaatcaatttcacctcaaccatttttctaatatttgactttcatcttgacctta |
46471363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University