View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_27 (Length: 416)
Name: NF2749_low_27
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 32815816 - 32816219
Alignment:
| Q |
1 |
catttttaaaaatgtattattttatttactaatataac-catatttttt-aatctgcaggtggatagggnnnnnnnnncatggttgggaggggatatttg |
98 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||| |||||||||||||||| |||| |
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| T |
32815816 |
catttttaaaaatgtattattttatttactaatataacacatctttttttaatctgcaggtggatagg-aaaataaaacatggttgggaggggacgtttg |
32815914 |
T |
|
| Q |
99 |
acccactaaaggtggtcaactaggttttttggcggagattagtcatcgacaaagttgatggatacttcacatctattatctatagttnnnnnnntaagta |
198 |
Q |
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||||||||||||||| ||||||||||||| |||||||||| ||||| |||| |||| ||||||||||||||||||||||||||| ||| || |
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| T |
32815915 |
acccactaaaggtggccaactaggtttttcagcggagattaatcatcagtaaagctgatagatacttcacatctattatctatagttaaaaaaataaata |
32816014 |
T |
|
| Q |
199 |
cgaagaattattattact-gtcatcattattttgattgttcttaggaaattgttacaaaagaattgatctatgaagtgtgatttatgatgatgatattca |
297 |
Q |
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|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
32816015 |
cgaagaattattattactagtcattattatttttattgttcttaggaaattgttacaaaagaattgatttatgaaatgtgatttatgatgatgatattca |
32816114 |
T |
|
| Q |
298 |
acatttagttgatgcaacagctctagcccaaaacttgatatgttttttcatgtcatctgcagacatcttatttccccaatttggaacaggaggagttgca |
397 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32816115 |
acatttagttgaagccacagctctagcccaaaacttgatatgttttttcatgtcatctgcagacatcttatttccccaatttggaacaggaggagttgca |
32816214 |
T |
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| Q |
398 |
caact |
402 |
Q |
| |
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||||| |
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| T |
32816215 |
caact |
32816219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 78 - 402
Target Start/End: Original strand, 32784643 - 32784967
Alignment:
| Q |
78 |
atggttgggaggggatatttgacccactaaaggtggtcaactaggttttttggcggagattagtcatcgacaaagttgatggatacttcacatctattat |
177 |
Q |
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|||||||||||||||||||||||||||||||| || ||| ||||||||| || ||||||| |||||| ||||||||||||||||||| |||||||| | |
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| T |
32784643 |
atggttgggaggggatatttgacccactaaagatgaccaattaggtttttcagcagagattaatcatcggcaaagttgatggatacttcgcatctatttt |
32784742 |
T |
|
| Q |
178 |
ctatagttnnnnnnntaagtacgaagaattattattactgtcatcattattttgattgttcttaggaaattgttacaaaagaattgatctatgaagtgtg |
277 |
Q |
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|||||||| ||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32784743 |
ctatagttaaaaaaataaatacgaagaatgattattactgtcattattattttgattgttcttaggaaattgttacaaaagaattgatctatgaagtgtg |
32784842 |
T |
|
| Q |
278 |
atttatgatgatgatattcaacatttagttgatgcaacagctctagcccaaaacttgatatgttttttcatgtcatctgcagacatcttatttccccaat |
377 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32784843 |
atttatgatgatgatattcaacatttagttgatgcaacagctctagcccaaaacttgatatgttttttcatgtcatctgcagacatcttatttccccaat |
32784942 |
T |
|
| Q |
378 |
ttggaacaggaggagttgcacaact |
402 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
32784943 |
ttggaacaggaggagttgcacaact |
32784967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 32807816 - 32807850
Alignment:
| Q |
4 |
ttttaaaaatgtattattttatttactaatataac |
38 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
32807816 |
ttttaaaaatgtattattttatttactaatataac |
32807850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 166
Target Start/End: Complemental strand, 13400393 - 13400363
Alignment:
| Q |
136 |
attagtcatcgacaaagttgatggatacttc |
166 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
13400393 |
attagtcatcgacaaagttgatggatacttc |
13400363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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