View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2749_low_28 (Length: 409)
Name: NF2749_low_28
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 18028574 - 18028903
Alignment:
| Q |
12 |
tttcgttttgatattgattttatggctcaatggctacataacgaaaaatggggatcaagaatttaacacattccagattcaaacatgcacgtttactatt |
111 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18028574 |
tttcattttaatattgattttatggctcaatggctacataaagaaaaatggggatcaagaatttaacaaattccagattcaaacatgcacgtttactatt |
18028673 |
T |
|
| Q |
112 |
agtgtttatagctttcaccaactgagctacgcacgcgagactaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaag |
211 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18028674 |
agtgttcatagctttcaccaactgagctacacacgcgagactaatttacttgttgtgttgtttgtaaatgtagtggccaggagcatactgtgacacaaag |
18028773 |
T |
|
| Q |
212 |
caaagctgctgttatccgaaaaccggaaaaccgacggcagattttggcattcatggactgtggcctaactacaatgatggatcatggccctcaaactgtg |
311 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18028774 |
cagagctgctgttatccgaaaaccggaaaaccgacggcagattttggcattcatggactgtggcctaactacaacgatggatcatggccctcaaactgtg |
18028873 |
T |
|
| Q |
312 |
atcctgatagtacctttgataaatctcagg |
341 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |
|
|
| T |
18028874 |
atccagatagtacctttgataaatctcagg |
18028903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 183 - 310
Target Start/End: Original strand, 18034551 - 18034678
Alignment:
| Q |
183 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagattttggcattcatggactgtggcctaacta |
282 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||| |
|
|
| T |
18034551 |
agtggccaggagcaatctgtgactcaaagcagagctgctgttttccgaaaaccggaaaaccgacagcagattttaccattgctggacttaggcctaactt |
18034650 |
T |
|
| Q |
283 |
caatgatggatcatggccctcaaactgt |
310 |
Q |
| |
|
|||||||||||||| |||||||||||| |
|
|
| T |
18034651 |
caatgatggatcatctccctcaaactgt |
18034678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 256
Target Start/End: Original strand, 18052266 - 18052339
Alignment:
| Q |
183 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccgaaaaccggaaaaccgacggcagatttt |
256 |
Q |
| |
|
||||||||||| ||||||||||| |||| | | |||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
18052266 |
agtggccaggatcatactgtgactcaaaactaggctgctgttatccgaaaaccggtaaaccggcggcagatttt |
18052339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 230
Target Start/End: Original strand, 18047112 - 18047159
Alignment:
| Q |
183 |
agtggccaggagcatactgtgacacaaagcaaagctgctgttatccga |
230 |
Q |
| |
|
||||||||||||||||||||||| |||| || |||||||||||||||| |
|
|
| T |
18047112 |
agtggccaggagcatactgtgactcaaaccagagctgctgttatccga |
18047159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University