View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_29 (Length: 403)
Name: NF2749_low_29
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 3592508 - 3592878
Alignment:
| Q |
17 |
cacagaggtcaaatttacatgaacaacataagtaataaataagttaaaaagattaacaatggcaaggtactactattatatcactttagaaaaagagtaa |
116 |
Q |
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| T |
3592508 |
cacagaggtcaaatttacatgaacaacataagtaataaataagttaaaaagattaacaatggcaaggtactactattatatcactttagaaaaagagtaa |
3592607 |
T |
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| Q |
117 |
caattaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataagggaacaacaaggtgtattgtttgaccatacggattcaat |
216 |
Q |
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| T |
3592608 |
caattaaatggcaactttaattaataaggagaacagctgcgacaatgatacaaattataagggaacaacaaggtgtattttttgaccatacgaattcaat |
3592707 |
T |
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| Q |
217 |
ttaaaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaattagaatttaggaaaaaggggcagcacaagtaattgtattagaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592708 |
ttaaaagccaagcaacagaagtgattacggcaacagtaaataattcgtttcacaattaaaatttaggaaaaaggggcagcacaagtaattgtattagaat |
3592807 |
T |
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| Q |
317 |
caaaaatacatgtagcagcaataggaattacggtgaccatgtaaattttaaaggaatataatataaaaatg |
387 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3592808 |
caaaaatacatgtagcagcaatatgaattacggtggccatgtaaattttaaaggaatataatataaaaatg |
3592878 |
T |
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