View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_low_3 (Length: 693)

Name: NF2749_low_3
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_low_3
NF2749_low_3
[»] chr6 (11 HSPs)
chr6 (1-400)||(31452445-31452853)
chr6 (401-508)||(24125972-24126078)
chr6 (403-450)||(33479698-33479745)
chr6 (400-450)||(3543062-3543112)
chr6 (401-450)||(7193338-7193387)
chr6 (401-450)||(33480627-33480676)
chr6 (403-450)||(3542816-3542863)
chr6 (401-442)||(15083325-15083366)
chr6 (401-450)||(22579935-22579984)
chr6 (405-450)||(22582478-22582523)
chr6 (405-450)||(22587309-22587354)
[»] chr3 (9 HSPs)
chr3 (401-476)||(42144369-42144444)
chr3 (401-464)||(49756275-49756338)
chr3 (394-450)||(19132811-19132867)
chr3 (405-450)||(32490194-32490239)
chr3 (401-450)||(36750436-36750485)
chr3 (401-450)||(38923664-38923713)
chr3 (402-450)||(38922744-38922792)
chr3 (401-450)||(44687162-44687211)
chr3 (406-450)||(36750050-36750094)
[»] chr5 (11 HSPs)
chr5 (401-471)||(4608568-4608638)
chr5 (401-450)||(8204120-8204169)
chr5 (401-450)||(15184016-15184065)
chr5 (405-450)||(33001936-33001981)
chr5 (391-450)||(33002815-33002874)
chr5 (401-448)||(39950404-39950451)
chr5 (401-450)||(686417-686465)
chr5 (401-450)||(8040443-8040492)
chr5 (401-450)||(12190157-12190206)
chr5 (401-450)||(36626629-36626678)
chr5 (402-450)||(687347-687395)
[»] chr1 (13 HSPs)
chr1 (401-476)||(1013445-1013520)
chr1 (415-508)||(41882999-41883091)
chr1 (398-450)||(9947992-9948044)
chr1 (401-450)||(48972444-48972493)
chr1 (399-450)||(16270205-16270256)
chr1 (391-450)||(43737719-43737778)
chr1 (400-450)||(23440864-23440914)
chr1 (401-450)||(51974437-51974486)
chr1 (400-442)||(193849-193891)
chr1 (400-450)||(9948886-9948936)
chr1 (401-450)||(23440617-23440666)
chr1 (401-450)||(43737977-43738026)
chr1 (401-449)||(37822472-37822520)
[»] chr4 (18 HSPs)
chr4 (401-508)||(47377540-47377646)
chr4 (401-450)||(11417687-11417736)
chr4 (401-450)||(29651331-29651380)
chr4 (401-501)||(31910554-31910654)
chr4 (455-501)||(17978316-17978362)
chr4 (400-450)||(39523270-39523320)
chr4 (401-450)||(9939370-9939419)
chr4 (401-450)||(10424123-10424172)
chr4 (401-450)||(10425058-10425107)
chr4 (401-450)||(11417936-11417985)
chr4 (401-450)||(26611282-26611331)
chr4 (401-450)||(31836459-31836508)
chr4 (401-450)||(36865716-36865765)
chr4 (401-450)||(38694702-38694751)
chr4 (401-442)||(38694961-38695002)
chr4 (401-450)||(45235959-45236008)
chr4 (401-449)||(42544488-42544536)
chr4 (398-450)||(45230362-45230414)
[»] chr7 (14 HSPs)
chr7 (401-508)||(29006347-29006454)
chr7 (401-508)||(29007140-29007247)
chr7 (399-450)||(668177-668228)
chr7 (400-450)||(38779562-38779612)
chr7 (401-450)||(17145622-17145671)
chr7 (401-450)||(37468910-37468959)
chr7 (401-450)||(37469004-37469053)
chr7 (401-450)||(38778854-38778903)
chr7 (401-450)||(41194513-41194562)
chr7 (401-512)||(41195304-41195414)
chr7 (403-450)||(7677808-7677855)
chr7 (455-501)||(34368164-34368210)
chr7 (401-450)||(4261595-4261644)
chr7 (401-450)||(41224842-41224891)
[»] chr2 (12 HSPs)
chr2 (401-471)||(16426553-16426623)
chr2 (399-450)||(21471953-21472004)
chr2 (401-450)||(14573261-14573310)
chr2 (401-450)||(21471017-21471066)
chr2 (401-476)||(30545409-30545483)
chr2 (455-501)||(2992055-2992101)
chr2 (400-450)||(4479701-4479751)
chr2 (400-450)||(40992221-40992271)
chr2 (398-472)||(44154960-44155033)
chr2 (401-450)||(13134318-13134367)
chr2 (401-450)||(37547998-37548047)
chr2 (401-441)||(14574007-14574047)
[»] chr8 (6 HSPs)
chr8 (431-476)||(28091405-28091450)
chr8 (401-450)||(41092172-41092221)
chr8 (401-450)||(34992015-34992064)
chr8 (401-450)||(34992263-34992312)
chr8 (401-450)||(41859310-41859359)
chr8 (401-450)||(5034898-5034947)
[»] scaffold0311 (1 HSPs)
scaffold0311 (401-450)||(159-208)
[»] scaffold0155 (1 HSPs)
scaffold0155 (401-450)||(17339-17388)
[»] scaffold0041 (2 HSPs)
scaffold0041 (401-450)||(27221-27270)
scaffold0041 (401-450)||(27574-27623)


Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 400
Target Start/End: Original strand, 31452445 - 31452853
Alignment:
Q  1 atctagaaacatgctactactatttgagtgattgcaaactaataatgatgagtactagtagaatcaaatatgcatgcaatatt--cattaacgcttagat 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||  ||| |||||||    
T  31452445 atctaaaaacatgctactactatttgagtgattgcaaactaataatgatgagtactagtagaatcaaatatgcatgcaatatttacaaaaactcttagat 31452544  T
Q  99 g---------agatgatatatgcctcttctagtttagagatgcaacaacattaaaactcttaatgcgagtttattgttcgttttagtcccacgaggctcg 189  Q
    |         |||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||  |||    
T  31452545 gcgagtttagagatgatatatgcctcttttagtttagagatgcaacaacattaaaacttttaaagcgagtttattgttcgttttagtcccacaagattcg 31452644  T
Q  190 agagattagtcttcacagttacatgcgtgaataatacttgttttttgaccaaaaagaaaatgtatttaaaggagccaaaaaattcttacaaaacccaagt 289  Q
    |||||||||||||||||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31452645 agagattagtcttcacagttacgtgcgtgaagaatgcttg-tttttgaccaaaaagaaaatgtatttaaaggagccaaaaaattcttacaaaacccaagt 31452743  T
Q  290 gaaaccnnnnnnncttagaaaaacctaagtgaaaccgaaataatgcaagcgacaaaaatgtgtaactgagttgannnnnnnnnatatcatttgtttactt 389  Q
    ||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||         |||||||||||||| ||    
T  31452744 gaaacctttttttcttagaaaaacctaagtgaaaccgaaataatgaaagcgacaaaaatgtgtaactgagttga-ttttttttatatcatttgtttattt 31452842  T
Q  390 gttgaaaggag 400  Q
    |||||||||||    
T  31452843 gttgaaaggag 31452853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 508
Target Start/End: Original strand, 24125972 - 24126078
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagggatattaattttattatagtctat 500  Q
    |||| ||||||||||||||||||   ||| ||||||||||||| |||||| |  || |||||||||||| |||||| | |||||||||||||||||||||    
T  24125972 ggtggcatttaatttgggaaaggggagttgtttcccaccatgggaaagtt-attttcagccattagatttaagaggaacattaattttattatagtctat 24126070  T
Q  501 ccacacta 508  Q
    ||||||||    
T  24126071 ccacacta 24126078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 403 - 450
Target Start/End: Original strand, 33479698 - 33479745
Alignment:
Q  403 tgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  33479698 tgccatttaatttgggaaaggagagttatttcccaccatgggaaagtt 33479745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 3543112 - 3543062
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  3543112 gggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 3543062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 7193338 - 7193387
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  7193338 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 7193387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 33480676 - 33480627
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  33480676 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 33480627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 450
Target Start/End: Original strand, 3542816 - 3542863
Alignment:
Q  403 tgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 3542863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 15083366 - 15083325
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatg 442  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  15083366 ggtgccatttaatttgggaaaggagagttctttcccaccatg 15083325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 22579935 - 22579984
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||| ||||||    
T  22579935 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagtt 22579984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 22582523 - 22582478
Alignment:
Q  405 ccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  22582523 ccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 22582478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 22587354 - 22587309
Alignment:
Q  405 ccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  22587354 ccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 22587309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 401 - 476
Target Start/End: Original strand, 42144369 - 42144444
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagg 476  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||    
T  42144369 ggtgccatttaatttgggaaaggaatgttattttccaccatggaaaaatttagatttagccattagattaatgagg 42144444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 464
Target Start/End: Original strand, 49756275 - 49756338
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccatt 464  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  49756275 ggtgccatttaatttggaaaaggaatgttatttcccaccatgggaaagtttagatttagtcatt 49756338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 19132867 - 19132811
Alignment:
Q  394 aaaggagggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||    
T  19132867 aaagtagggtgccatttaatttgggaaaggaaagttctttcccaccatgggaaagtt 19132811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 32490239 - 32490194
Alignment:
Q  405 ccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  32490239 ccatttaatttgggaaaggagagttctttcccaccatggaaaagtt 32490194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 36750485 - 36750436
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  36750485 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 36750436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 38923713 - 38923664
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||||||    
T  38923713 ggtgccatttaatttgggaaatgagagttctttcccaccatggaaaagtt 38923664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 402 - 450
Target Start/End: Original strand, 38922744 - 38922792
Alignment:
Q  402 gtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||  ||||||||| ||||||| ||||||    
T  38922744 gtgccatttaatttgggaaaggagagttatttcctaccatgggaaagtt 38922792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 44687211 - 44687162
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||   || ||| ||||||||||||||||    
T  44687211 ggtgccatttaatttgggaaaggagaattcttttccaccatggaaaagtt 44687162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 406 - 450
Target Start/End: Original strand, 36750050 - 36750094
Alignment:
Q  406 catttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||  ||| ||| ||||||||||||||||    
T  36750050 catttaatttgggaaaggagagttcttttccaccatggaaaagtt 36750094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 401 - 471
Target Start/End: Complemental strand, 4608638 - 4608568
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaa 471  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  4608638 ggtgccatttaatctgggaaaggaatgttatttcccaccatgggaaagtttagatttagccattagattaa 4608568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 8204120 - 8204169
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  8204120 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 8204169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 15184065 - 15184016
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 15184016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 33001936 - 33001981
Alignment:
Q  405 ccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||  ||| ||||||||||||||||||||    
T  33001936 ccatttaatttgggaaaggagagttctttcccaccatggaaaagtt 33001981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 450
Target Start/End: Complemental strand, 33002874 - 33002815
Alignment:
Q  391 ttgaaaggagggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||| | |||| |||||||||||||||||||  ||| ||||||||||||| ||||||    
T  33002874 ttgaaagtaaggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagtt 33002815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 39950404 - 39950451
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaag 448  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  39950404 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 686417 - 686465
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  686417 ggtgccatttaatttgggaaaggagagtt-tttcccaccatgggaaagtt 686465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 8040492 - 8040443
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||||  || ||||||||| ||| ||||||    
T  8040492 ggtgccatttaatttgggaaaggaaatttctttcccaccgtgggaaagtt 8040443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 12190206 - 12190157
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  12190206 ggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagtt 12190157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 36626678 - 36626629
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||| ||||||    
T  36626678 ggtgccatttaatttgggaaatgagagttctttcccaccatgggaaagtt 36626629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 687395 - 687347
Alignment:
Q  402 gtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||  ||| ||| |||| |||||||||||    
T  687395 gtgccatttaatttgggaaaggagagttcttttccactatggaaaagtt 687347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 3e-25; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 1013520 - 1013445
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagg 476  Q
    |||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||    
T  1013520 ggtgtcatttaatttgggaaaggaatgttattttccaccatgggaaagtttagatttagccattagattaatgagg 1013445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 415 - 508
Target Start/End: Original strand, 41882999 - 41883091
Alignment:
Q  415 tgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagggatattaattttattatagtctatccacacta 508  Q
    ||||||||||| ||| |||||||||| | ||||||| |  ||||| |||||||||||||||  | ||| |||||||||||||||||||||||||    
T  41882999 tgggaaaggaaggttgtttcccaccaagaaaaagtt-atttttagtcattagattaaagagaaacatttattttattatagtctatccacacta 41883091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 9947992 - 9948044
Alignment:
Q  398 gagggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  9947992 gagggtgccatttaatttgggaaagaaaagttctttcccaccatggaaaagtt 9948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 48972493 - 48972444
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  48972493 ggtgccatttaatttgggaaaggagagttctttcccaccatggaaaagtt 48972444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 16270205 - 16270256
Alignment:
Q  399 agggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  16270205 agggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 16270256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 391 - 450
Target Start/End: Original strand, 43737719 - 43737778
Alignment:
Q  391 ttgaaaggagggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||| || |||||||||||||||||||||| |  ||||||||||||||||| ||||||    
T  43737719 ttgaaaagatggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagtt 43737778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 23440914 - 23440864
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  23440914 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 23440864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 51974437 - 51974486
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  51974437 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 51974486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 442
Target Start/End: Original strand, 193849 - 193891
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatg 442  Q
    |||||||||||||||||||||||||  ||| ||||||||||||    
T  193849 gggtgccatttaatttgggaaaggagagttctttcccaccatg 193891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 9948936 - 9948886
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||| ||||||||  ||| ||||||||||||| ||||||    
T  9948936 gggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagtt 9948886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 23440617 - 23440666
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||| || |||||||||||    
T  23440617 ggtgccatttaatttgggaaaggagagttctttccaactatggaaaagtt 23440666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 43738026 - 43737977
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||| ||||| ||||||    
T  43738026 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagtt 43737977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 37822472 - 37822520
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagt 449  Q
    |||| |||||||  ||||||||||| ||| |||||||||||||||||||    
T  37822472 ggtgtcatttaacctgggaaaggaaagttctttcccaccatggaaaagt 37822520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 401 - 508
Target Start/End: Complemental strand, 47377646 - 47377540
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagggatattaattttattatagtctat 500  Q
    |||||||||||||||||||||||   ||| ||||||||||||| |||||| |  || |||||||||||| |||||| | |||||||||||||||||||||    
T  47377646 ggtgccatttaatttgggaaaggggagttgtttcccaccatgggaaagtt-attttcagccattagatttaagaggaacattaattttattatagtctat 47377548  T
Q  501 ccacacta 508  Q
    ||||||||    
T  47377547 ccacacta 47377540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 11417687 - 11417736
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  11417687 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 11417736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 29651380 - 29651331
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  29651380 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 29651331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 501
Target Start/End: Original strand, 31910554 - 31910654
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagggatattaattttattatagtctat 500  Q
    |||| |||||||||| |||||||  |||| ||||||||||||| ||||||    |||| |||||| ||||||||||  ||| |||||||| || ||||||    
T  31910554 ggtgtcatttaatttaggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattaaattaaagaggagtatcaattttatcatggtctat 31910653  T
Q  501 c 501  Q
    |    
T  31910654 c 31910654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 17978316 - 17978362
Alignment:
Q  455 tttagccattagattaaagagggatattaattttattatagtctatc 501  Q
    ||||||||||||||||||||||  |||||||||||| || |||||||    
T  17978316 tttagccattagattaaagaggtgtattaattttatcatggtctatc 17978362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 39523320 - 39523270
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||||  ||| ||| ||||||||| ||||||    
T  39523320 gggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagtt 39523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 9939419 - 9939370
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||| ||||||   ||| ||||||||||||||||||||    
T  9939419 ggtgccatttaatttgagaaaggggagttctttcccaccatggaaaagtt 9939370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 10424123 - 10424172
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||| | ||||||    
T  10424123 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagtt 10424172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 10425107 - 10425058
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||| ||||||||  ||| ||||||||||||| ||||||    
T  10425107 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagtt 10425058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 11417985 - 11417936
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||| |||||||||||||||||||  ||| ||||||||||||| ||||||    
T  11417985 ggtgtcatttaatttgggaaaggagagttctttcccaccatgggaaagtt 11417936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 26611331 - 26611282
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||| |||||||||||||||||||  ||| ||||||||||||| ||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagtt 26611282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 31836508 - 31836459
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||| |||||||  ||| ||||||||||||| ||||||    
T  31836508 ggtgccatttaatttgagaaaggagagttctttcccaccatgggaaagtt 31836459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 36865765 - 36865716
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||| |||||||||||||||||||  ||| ||||||||||||| ||||||    
T  36865765 ggtgacatttaatttgggaaaggagagttctttcccaccatgggaaagtt 36865716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 38694702 - 38694751
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||| ||||||  ||| ||||||| ||||||||||||    
T  38694702 ggtgccatttaatttggaaaaggagagttctttcccagcatggaaaagtt 38694751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 38695002 - 38694961
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatg 442  Q
    ||||||||||||||||||||||||  ||| ||||||||||||    
T  38695002 ggtgccatttaatttgggaaaggagagttctttcccaccatg 38694961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 45236008 - 45235959
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||| ||||||  ||| ||||||||||||| ||||||    
T  45236008 ggtgccatttaatttggaaaaggagagttctttcccaccatgggaaagtt 45235959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 42544488 - 42544536
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagt 449  Q
    |||||||||||||||||||||| |   || |||||||||||||||||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagt 42544536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 45230362 - 45230414
Alignment:
Q  398 gagggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||| |||||| ||  ||| ||||||||||||| ||||||    
T  45230362 gagggtgccatttaattcgggaaaagagagttctttcccaccatgggaaagtt 45230414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 401 - 508
Target Start/End: Original strand, 29006347 - 29006454
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagggatattaattttattatagtctat 500  Q
    |||||||||||||||||||||||  |||| ||||||||||||| ||||||    |||| |||||||||||||||||  ||  |||||||| || ||||||    
T  29006347 ggtgccatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtaccaattttatcatggtctat 29006446  T
Q  501 ccacacta 508  Q
    ||||||||    
T  29006447 ccacacta 29006454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 401 - 508
Target Start/End: Complemental strand, 29007247 - 29007140
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagggatattaattttattatagtctat 500  Q
    |||| ||||||||||||||||||  |||| ||||||||||||| ||||||    |||| |||||||||||||||||  || ||||||||| || ||||||    
T  29007247 ggtgtcatttaatttgggaaaggcttgttttttcccaccatgggaaagttagtttttaaccattagattaaagaggagtactaattttatcatggtctat 29007148  T
Q  501 ccacacta 508  Q
    ||||||||    
T  29007147 ccacacta 29007140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 450
Target Start/End: Original strand, 668177 - 668228
Alignment:
Q  399 agggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  668177 agggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 668228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 38779612 - 38779562
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  38779612 gggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 38779562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 17145622 - 17145671
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 17145671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 37468910 - 37468959
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  37468910 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 37468959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 37469053 - 37469004
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 37469004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 38778854 - 38778903
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  38778854 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 38778903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 41194513 - 41194562
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  41194513 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 41194562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 512
Target Start/End: Complemental strand, 41195414 - 41195304
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagat-ttagccattagattaaagagggatattaattttattatagtcta 499  Q
    |||||||||||||||||||||| ||  || ||||||| ||||||||||  || || | | |||||||||| |||||| | ||| ||||||| ||| |||     
T  41195414 ggtgccatttaatttgggaaagcaaacttctttcccatcatggaaaag--taaatctcaaccattagattcaagaggaacattgattttatcatactctc 41195317  T
Q  500 tccacactagatt 512  Q
    |||||||||||||    
T  41195316 tccacactagatt 41195304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 7677855 - 7677808
Alignment:
Q  403 tgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  7677855 tgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 7677808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 501
Target Start/End: Complemental strand, 34368210 - 34368164
Alignment:
Q  455 tttagccattagattaaagagggatattaattttattatagtctatc 501  Q
    ||||||||||||||||||||||  |||||||||||| || |||||||    
T  34368210 tttagccattagattaaagaggtgtattaattttatcatggtctatc 34368164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 4261644 - 4261595
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||| ||||||||  ||| ||||||||||||| ||||||    
T  4261644 ggtgccatttaatttaggaaaggagagttctttcccaccatgggaaagtt 4261595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 41224891 - 41224842
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||  | || ||||||||||||| ||||||    
T  41224891 ggtgccatttaatttgggaaaggcttattttttcccaccatgggaaagtt 41224842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 401 - 471
Target Start/End: Original strand, 16426553 - 16426623
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaa 471  Q
    |||||||||||||||||||||||  |||| |||||||||||||||||||| |  |||| ||||| ||||||    
T  16426553 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagttaatttttaaccatttgattaa 16426623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 399 - 450
Target Start/End: Complemental strand, 21472004 - 21471953
Alignment:
Q  399 agggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  21472004 agggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 21471953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 14573261 - 14573310
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 14573310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 21471017 - 21471066
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  21471017 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 21471066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 476
Target Start/End: Complemental strand, 30545483 - 30545409
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaagagg 476  Q
    ||||||||||||||||||||||| | ||| |||||||  |||| |||||||   |||| |||||||||||||||||    
T  30545483 ggtgccatttaatttgggaaagggaagttgtttcccatgatgggaaagttt-tttttaaccattagattaaagagg 30545409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 2992055 - 2992101
Alignment:
Q  455 tttagccattagattaaagagggatattaattttattatagtctatc 501  Q
    ||||||||||||||||||||||  |||||||||||| || |||||||    
T  2992055 tttagccattagattaaagaggtgtattaattttatcatggtctatc 2992101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 450
Target Start/End: Complemental strand, 4479751 - 4479701
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||||  ||| |||| |||||||| ||||||    
T  4479751 gggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagtt 4479701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 400 - 450
Target Start/End: Original strand, 40992221 - 40992271
Alignment:
Q  400 gggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  |||| ||||| ||||||| ||||||    
T  40992221 gggtgccatttaatttgggaaaggtttgttttttcctaccatgggaaagtt 40992271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 398 - 472
Target Start/End: Complemental strand, 44155033 - 44154960
Alignment:
Q  398 gagggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtttagatttagccattagattaaa 472  Q
    |||||||| ||||||||||||||||| | ||| |||||||  ||||||||||| |  |||||||||| |||||||    
T  44155033 gagggtgctatttaatttgggaaagggaagttgtttcccatgatggaaaagttga-ttttagccatttgattaaa 44154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 13134318 - 13134367
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||| | ||||||    
T  13134318 ggtgccatttaatttgggaaaggagagttctttcccaccataggaaagtt 13134367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 37547998 - 37548047
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||| ||||| ||||||    
T  37547998 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagtt 37548047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 14574047 - 14574007
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccat 441  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  14574047 ggtgccatttaatttgggaaaggagagttctttcccaccat 14574007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 431 - 476
Target Start/End: Original strand, 28091405 - 28091450
Alignment:
Q  431 tttcccaccatggaaaagtttagatttagccattagattaaagagg 476  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  28091405 tttcccaccatggaaaagtttagatttagccattaaattaatgagg 28091450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 41092172 - 41092221
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||    
T  41092172 ggtgccatttaatttgggaaaggcttgttttttcccaccatggaaaagtt 41092221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 34992015 - 34992064
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||| ||  ||||||| ||||||||||||||||    
T  34992015 ggtgccatttaatttgggaaacgagagttattttccaccatggaaaagtt 34992064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 34992312 - 34992263
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagtt 34992263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 41859310 - 41859359
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  41859310 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 41859359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 5034898 - 5034947
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||| ||||||    
T  5034898 ggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagtt 5034947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 208 - 159
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||||||||| ||||||    
T  208 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagtt 159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 17339 - 17388
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||| |||||  |||| ||||||||||||| ||||||    
T  17339 ggtgccatttaatttggaaaaggcttgttttttcccaccatgggaaagtt 17388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Original strand, 27221 - 27270
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||||||||||  ||| ||||||| ||||| ||||||    
T  27221 ggtgccatttaatttgggaaaggagagttctttcccatcatgggaaagtt 27270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 27623 - 27574
Alignment:
Q  401 ggtgccatttaatttgggaaaggaatgttatttcccaccatggaaaagtt 450  Q
    ||||||||||||||||| ||||||  ||| ||||||||||||| ||||||    
T  27623 ggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagtt 27574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University