View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_low_33 (Length: 363)

Name: NF2749_low_33
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_low_33
NF2749_low_33
[»] chr4 (17 HSPs)
chr4 (16-363)||(26315673-26316030)
chr4 (98-175)||(46676480-46676557)
chr4 (98-142)||(56497623-56497667)
chr4 (116-154)||(42756109-42756147)
chr4 (118-167)||(2649723-2649772)
chr4 (98-146)||(19731140-19731189)
chr4 (98-175)||(20799376-20799453)
chr4 (98-175)||(38453267-38453344)
chr4 (98-167)||(49473647-49473716)
chr4 (98-142)||(7230282-7230326)
chr4 (98-142)||(24785477-24785521)
chr4 (98-142)||(24822745-24822789)
chr4 (102-166)||(26008040-26008104)
chr4 (118-174)||(28435231-28435287)
chr4 (119-175)||(34833988-34834044)
chr4 (98-142)||(42845027-42845071)
chr4 (98-154)||(55924790-55924846)
[»] chr8 (20 HSPs)
chr8 (98-175)||(19778067-19778144)
chr8 (120-157)||(11104788-11104825)
chr8 (99-175)||(9635035-9635111)
chr8 (97-157)||(40167323-40167383)
chr8 (99-142)||(444416-444459)
chr8 (120-175)||(44975202-44975257)
chr8 (101-167)||(1244695-1244761)
chr8 (116-146)||(5179813-5179843)
chr8 (98-176)||(29499773-29499851)
chr8 (118-156)||(33620920-33620958)
chr8 (97-134)||(29774372-29774409)
chr8 (98-167)||(33445572-33445641)
chr8 (102-146)||(12714381-12714425)
chr8 (98-142)||(15438455-15438499)
chr8 (98-142)||(15529759-15529803)
chr8 (98-142)||(17704015-17704059)
chr8 (98-142)||(19488302-19488346)
chr8 (120-168)||(20469300-20469348)
chr8 (98-142)||(30623295-30623339)
chr8 (118-178)||(31832069-31832129)
[»] chr6 (7 HSPs)
chr6 (102-167)||(9923246-9923311)
chr6 (98-157)||(18254101-18254160)
chr6 (98-140)||(7083009-7083051)
chr6 (98-140)||(26522474-26522516)
chr6 (98-146)||(788868-788916)
chr6 (98-146)||(8629707-8629755)
chr6 (98-142)||(9333733-9333777)
[»] chr2 (15 HSPs)
chr2 (98-175)||(24548013-24548090)
chr2 (98-175)||(24593378-24593455)
chr2 (98-142)||(7413204-7413248)
chr2 (98-154)||(10156019-10156075)
chr2 (98-146)||(20120732-20120780)
chr2 (101-145)||(30045458-30045502)
chr2 (101-145)||(30050621-30050665)
chr2 (101-145)||(30141665-30141709)
chr2 (98-144)||(11560500-11560546)
chr2 (99-156)||(12124687-12124744)
chr2 (98-143)||(18231487-18231532)
chr2 (98-175)||(29544629-29544706)
chr2 (98-142)||(19179065-19179109)
chr2 (98-142)||(20455893-20455937)
chr2 (98-142)||(40099398-40099442)
[»] chr7 (11 HSPs)
chr7 (98-174)||(20103437-20103513)
chr7 (98-174)||(46987088-46987164)
chr7 (116-175)||(6384871-6384930)
chr7 (99-180)||(18714451-18714532)
chr7 (119-156)||(8879748-8879785)
chr7 (98-155)||(24991783-24991840)
chr7 (98-142)||(5352331-5352375)
chr7 (98-142)||(8615025-8615069)
chr7 (98-142)||(21050237-21050281)
chr7 (118-166)||(27263363-27263411)
chr7 (99-167)||(32896454-32896522)
[»] chr1 (13 HSPs)
chr1 (98-174)||(35473954-35474030)
chr1 (98-167)||(17283953-17284022)
chr1 (98-175)||(19262889-19262966)
chr1 (98-175)||(21638115-21638192)
chr1 (118-167)||(45190259-45190308)
chr1 (98-168)||(38448855-38448925)
chr1 (98-175)||(5907801-5907878)
chr1 (98-175)||(47528429-47528506)
chr1 (120-156)||(11913754-11913790)
chr1 (98-166)||(17396710-17396778)
chr1 (100-144)||(20372922-20372966)
chr1 (98-142)||(27127226-27127270)
chr1 (98-178)||(47719086-47719166)
[»] scaffold0238 (1 HSPs)
scaffold0238 (98-177)||(25391-25470)
[»] chr3 (17 HSPs)
chr3 (98-157)||(52119378-52119437)
chr3 (98-175)||(29631188-29631265)
chr3 (100-177)||(35191797-35191874)
chr3 (119-175)||(17507681-17507737)
chr3 (116-175)||(4216382-4216440)
chr3 (99-146)||(10926472-10926519)
chr3 (116-175)||(37376572-37376631)
chr3 (118-177)||(41817521-41817580)
chr3 (98-145)||(47377361-47377408)
chr3 (98-144)||(16980367-16980413)
chr3 (98-168)||(53207972-53208042)
chr3 (98-167)||(1149059-1149128)
chr3 (98-175)||(25505684-25505760)
chr3 (120-177)||(38573553-38573610)
chr3 (100-140)||(13992675-13992715)
chr3 (99-135)||(33224690-33224726)
chr3 (98-142)||(46469279-46469323)
[»] chr5 (8 HSPs)
chr5 (98-167)||(2053028-2053097)
chr5 (116-167)||(22901979-22902030)
chr5 (98-145)||(26400224-26400271)
chr5 (98-175)||(6624778-6624855)
chr5 (98-143)||(36321508-36321553)
chr5 (98-167)||(37932332-37932401)
chr5 (98-142)||(16133080-16133124)
chr5 (98-142)||(39914903-39914947)
[»] scaffold0025 (1 HSPs)
scaffold0025 (98-157)||(64220-64279)
[»] scaffold1619 (1 HSPs)
scaffold1619 (119-167)||(1054-1102)
[»] scaffold1379 (1 HSPs)
scaffold1379 (98-146)||(1638-1686)
[»] scaffold0198 (1 HSPs)
scaffold0198 (120-164)||(19263-19307)
[»] scaffold0069 (1 HSPs)
scaffold0069 (100-144)||(52084-52128)
[»] scaffold0044 (1 HSPs)
scaffold0044 (98-142)||(42349-42393)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 26315673 - 26316030
Alignment:
Q  16 atatctcatcaaaaatttactatataatgagttaataatttcttacctaagttcctaagtcattacacaag----------tagcagtcctcgagcttag 105  Q
    ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||          ||||||| |||||||||||    
T  26315673 atatctcatcacaaatttactatatgatgagttaataatttcttacctaagttcctaagtcattacacaagaggtagcaagtagcagttctcgagcttag 26315772  T
Q  106 ctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaagaggtaaaacaatcgaccttagggatgagg 205  Q
     ||||||| |||||| |||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26315773 ttcaatttaaaaggataatgcataatatatacaaggttcgatgttcgaaccctagacaccacctaaaaaagaggtaaaacaatcgaccttagggatgagg 26315872  T
Q  206 gaaaacatatactgaaccccacacatataaaatacaatcgtaaagatcttaatataacatgctagcatatccagaaaattcttttcttatgtacattgga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315873 gaaaacatatactgaaccccacacatataaaatacaatcgtaaagatcttaatataacatgctagcatatccagaaaattcttttcttatgtacattgga 26315972  T
Q  306 aaaatgttaggtgttctccattcaatgtgatcccaaacaatatcaggttgcgggtcta 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26315973 aaaatgttaggtgttctccattcaatgtgatcccaaacaatatcaggttgcgggtcta 26316030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 46676557 - 46676480
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | |||||||||||||||||||| |||||| |||  ||||| ||| |||||||||| ||||||    
T  46676557 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgacccccagacaccaccaaaaaaa 46676480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 56497667 - 56497623
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||||||||||||| | |||||||||||||||||||| ||||||    
T  56497667 gagcttagctcaattggtaaggacaatgcataatatatgcaaggt 56497623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 154
Target Start/End: Complemental strand, 42756147 - 42756109
Alignment:
Q  116 aaggacaatgcataatatatacaaggttcggtattcgaa 154  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  42756147 aaggacaatgcataatatatgcaaggttcgggattcgaa 42756109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 2649772 - 2649723
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||||||||| |||||| |||  |||||||||||| ||||||    
T  2649772 ggacaatgcataatatatgcaaggtccggagttcgaaccctagccaccac 2649723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 19731189 - 19731140
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgca-taatatatacaaggttcgg 146  Q
    ||||||||||||||| | |||||||||||| |||||||| ||||||||||    
T  19731189 gagcttagctcaattggtaaggacaatgcattaatatatgcaaggttcgg 19731140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 20799453 - 20799376
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | | |||||||||||||||||| |||||| |||  ||| |||||| | ||||||| ||||||    
T  20799453 gagcttagctcagttggtagggacaatgcataatatatgcaaggtccggggttcaaaccctggtcaccaccaaaaaaa 20799376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 38453267 - 38453344
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | | |||||||||||||||||| |||||| | |  ||||||||| || ||||||| ||||||    
T  38453267 gagcttagctcagttggcatggacaatgcataatatatgcaaggtccagggttcgaaccccagccaccaccaaaaaaa 38453344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 49473647 - 49473716
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    ||||||||| || || | |||||||||||||||||||| |||||| |||  ||||||||| || ||||||    
T  49473647 gagcttagcccagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccagtcaccac 49473716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 7230282 - 7230326
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  7230282 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 7230326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 24785521 - 24785477
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||| |||||| || | |||||||||||||||||||||||||||    
T  24785521 gagctaagctcagttggtaaggacaatgcataatatatacaaggt 24785477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 24822745 - 24822789
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||| |||||| || | |||||||||||||||||||||||||||    
T  24822745 gagctaagctcagttggtaaggacaatgcataatatatacaaggt 24822789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 26008104 - 26008040
Alignment:
Q  102 ttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacacca 166  Q
    |||| |||||| | || ||||||||||||||||| |||||| || | ||||| ||||||||||||    
T  26008104 ttagttcaattggtaaagacaatgcataatatatgcaaggtccgttgttcgatccctagacacca 26008040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 28435287 - 28435231
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaa 174  Q
    |||||||||||||||||| ||||||||||  ||| ||||| || ||||||| |||||    
T  28435287 ggacaatgcataatatatgcaaggttcggggttcaaaccccagccaccaccaaaaaa 28435231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 34834044 - 34833988
Alignment:
Q  119 gacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    ||||||||||||||||| |||||| |||  ||||||| || ||||||||| ||||||    
T  34834044 gacaatgcataatatatgcaaggtccggggttcgaacactggacaccaccaaaaaaa 34833988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 42845027 - 42845071
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||||| |||| || |||||||||||||||||||||| ||||||    
T  42845027 gagcttaactcagttggaaaggacaatgcataatatatgcaaggt 42845071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 55924846 - 55924790
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaa 154  Q
    ||||||||||||||| | ||||||||| |||||||||| |||| ||| | |||||||    
T  55924846 gagcttagctcaattggtaaggacaatacataatatatgcaagtttcaggattcgaa 55924790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 19778067 - 19778144
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | |||||||||||||||||||| |||||| |||  |||||| ||||||||||||| ||||||    
T  19778067 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcctagacaccaccaaaaaaa 19778144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 157
Target Start/End: Original strand, 11104788 - 11104825
Alignment:
Q  120 acaatgcataatatatacaaggttcggtattcgaaccc 157  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  11104788 acaatgcataatatatacaaggttcgggattcgaaccc 11104825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 9635111 - 9635035
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    ||||||||||| |||| ||||| ||||||||||| || ||||||||||  ||||||||| | | |||||| ||||||    
T  9635111 agcttagctcagtttgtaaggataatgcataatacatgcaaggttcggggttcgaacccaaaataccaccaaaaaaa 9635035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 40167323 - 40167383
Alignment:
Q  97 cgagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccc 157  Q
    |||||||| |||| || | | ||||||||||||||||||||||||||||| |||| |||||    
T  40167323 cgagcttaactcagttggtatggacaatgcataatatatacaaggttcgggattcaaaccc 40167383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 444416 - 444459
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||||| | |||||||||||||||||||| ||||||    
T  444416 agcttagctcaattggtaaggacaatgcataatatatgcaaggt 444459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 175
Target Start/End: Original strand, 44975202 - 44975257
Alignment:
Q  120 acaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||||||| |||||||||| ||||||| ||  ||||||||| ||||||    
T  44975202 acaatgcataatatatgcaaggttcgggattcgaaacccggacaccaccaaaaaaa 44975257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 1244761 - 1244695
Alignment:
Q  101 cttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    ||||||||| || | |||||||||||||||||||||||||||  ||  |||||||||  ||||||||    
T  1244761 cttagctcagttggtaaggacaatgcataatatatacaaggtctggggttcgaaccccggacaccac 1244695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 146
Target Start/End: Original strand, 5179813 - 5179843
Alignment:
Q  116 aaggacaatgcataatatatacaaggttcgg 146  Q
    |||||||||||||||||||||||||||||||    
T  5179813 aaggacaatgcataatatatacaaggttcgg 5179843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 29499773 - 29499851
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaag 176  Q
    ||||||||||||||| | | ||||||||||||| |||| |||||| | |  ||||||||| | |||||||| |||||||    
T  29499773 gagcttagctcaattggtatggacaatgcataaaatatgcaaggtccagggttcgaaccccaaacaccaccaaaaaaag 29499851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 33620920 - 33620958
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaacc 156  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  33620920 ggacaatgcataatatatacaaggttcggagttcgaacc 33620958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 134
Target Start/End: Original strand, 29774372 - 29774409
Alignment:
Q  97 cgagcttagctcaatttgaaaggacaatgcataatata 134  Q
    |||||||||||||||  |||||||||||||||||||||    
T  29774372 cgagcttagctcaataagaaaggacaatgcataatata 29774409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 33445572 - 33445641
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||| || | | | |||||||||||||||||||||||| |  |||||||||  |||||||||    
T  33445572 gagcttagctcagttggtaggaacaatgcataatatatacaaggtttgagattcgaacctcagacaccac 33445641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 12714425 - 12714381
Alignment:
Q  102 ttagctcaatttgaaaggacaatgcataatatatacaaggttcgg 146  Q
    |||||||| || ||| |||||||||||||||||| ||||||||||    
T  12714425 ttagctcagttggaagggacaatgcataatatatgcaaggttcgg 12714381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 15438455 - 15438499
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  15438455 gagcttagctcacttggtaaggacaatgcataatatatgcaaggt 15438499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 15529759 - 15529803
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  15529759 gagcttagctcacttggtaaggacaatgcataatatatgcaaggt 15529803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 17704015 - 17704059
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  17704015 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 17704059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 19488302 - 19488346
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||| ||||||| || | |||||||||||||||||||||||||||    
T  19488302 gagcatagctcagttggtaaggacaatgcataatatatacaaggt 19488346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 20469348 - 20469300
Alignment:
Q  120 acaatgcataatatatacaaggttcggtattcgaaccctagacaccacc 168  Q
    |||||||||||||||| ||||||||||  ||||||||| || |||||||    
T  20469348 acaatgcataatatatgcaaggttcggagttcgaaccccagccaccacc 20469300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 30623295 - 30623339
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  30623295 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 30623339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 31832129 - 31832069
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaagag 178  Q
    |||||||||||||||||| ||| || |||  |||||||||  ||||||||| |||||||||    
T  31832129 ggacaatgcataatatatgcaatgtccgggtttcgaaccccggacaccaccaaaaaaagag 31832069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 167
Target Start/End: Original strand, 9923246 - 9923311
Alignment:
Q  102 ttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||   ||||||||||||||||||||||||||||||| |||| |||| | ||||||||    
T  9923246 ttagctcaattgataaggacaatgcataatatatacaaggttcgggattcaaaccttggacaccac 9923311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 18254160 - 18254101
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccc 157  Q
    |||||||||||| || | ||||||||||||||||| || |||||| ||| ||||||||||    
T  18254160 gagcttagctcagttggtaaggacaatgcataatacatgcaaggtccgggattcgaaccc 18254101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 7083051 - 7083009
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaag 140  Q
    ||||||||||||||| | |||||||||||||||||||| ||||    
T  7083051 gagcttagctcaattggtaaggacaatgcataatatatgcaag 7083009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 140
Target Start/End: Original strand, 26522474 - 26522516
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaag 140  Q
    |||||||||||| || | |||||||||||||||||||||||||    
T  26522474 gagcttagctcagttggtaaggacaatgcataatatatacaag 26522516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 788868 - 788916
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcgg 146  Q
    ||||||| |||| || | |||||||||||||||||||| ||||||||||    
T  788868 gagcttatctcagttggtaaggacaatgcataatatatgcaaggttcgg 788916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 8629755 - 8629707
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcgg 146  Q
    ||||||| ||||||| | | |||||||||||||||||| ||||||||||    
T  8629755 gagcttaactcaattggtatggacaatgcataatatatgcaaggttcgg 8629707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 9333733 - 9333777
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||||||||||||| | ||||||||||||| |||||| ||||||    
T  9333733 gagcttagctcaattggtaaggacaatgcattatatatgcaaggt 9333777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 24548013 - 24548090
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | ||||||||| |||||||||| |||||| |||  |||||||||| ||||||||| ||||||    
T  24548013 gagcttagctcagttggtaaggacaatccataatatattcaaggtccggggttcgaaccctggacaccaccaaaaaaa 24548090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 24593378 - 24593455
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | |||||||||||||||||||| |||||| |||  ||||||||||  |||||||| ||||||    
T  24593378 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccctgaacaccaccaaaaaaa 24593455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 7413248 - 7413204
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||||||||||    
T  7413248 gagcttagctcagttggtaaggacaatgcataatatatacaaggt 7413204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 10156019 - 10156075
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaa 154  Q
    |||||||||||| || | ||||||||| |||||||||| ||||||||||| ||||||    
T  10156019 gagcttagctcagttggtaaggacaatacataatatatgcaaggttcggtgttcgaa 10156075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 20120780 - 20120732
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcgg 146  Q
    |||||||||||| || | |||||||||||||||||||| ||||||||||    
T  20120780 gagcttagctcagttggtaaggacaatgcataatatatgcaaggttcgg 20120732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 30045458 - 30045502
Alignment:
Q  101 cttagctcaatttgaaaggacaatgcataatatatacaaggttcg 145  Q
    |||||||||||| | | ||||||||||||||||||||||||||||    
T  30045458 cttagctcaattggtagggacaatgcataatatatacaaggttcg 30045502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 30050621 - 30050665
Alignment:
Q  101 cttagctcaatttgaaaggacaatgcataatatatacaaggttcg 145  Q
    |||||||||||| | | ||||||||||||||||||||||||||||    
T  30050621 cttagctcaattggtagggacaatgcataatatatacaaggttcg 30050665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 145
Target Start/End: Original strand, 30141665 - 30141709
Alignment:
Q  101 cttagctcaatttgaaaggacaatgcataatatatacaaggttcg 145  Q
    |||||||||||| | | ||||||||||||||||||||||||||||    
T  30141665 cttagctcaattggtagggacaatgcataatatatacaaggttcg 30141709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 11560500 - 11560546
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttc 144  Q
    ||||||||||||||| | | |||||||||||||||||| ||||||||    
T  11560500 gagcttagctcaattggtagggacaatgcataatatatgcaaggttc 11560546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 12124687 - 12124744
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaacc 156  Q
    ||||||||||| || | |||||||||||||||||||| |||||| |||  ||||||||    
T  12124687 agcttagctcagttggtaaggacaatgcataatatatgcaaggtccggagttcgaacc 12124744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 18231532 - 18231487
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggtt 143  Q
    |||||||||||| || | |||||||||||||||||||| |||||||    
T  18231532 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtt 18231487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 29544629 - 29544706
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    ||||||||||||||| | | |||||||||||||||||| |||||| |||  ||| |||||  | ||||||| ||||||    
T  29544629 gagcttagctcaattggtagggacaatgcataatatatgcaaggtccggggttcaaaccccggccaccaccaaaaaaa 29544706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 19179109 - 19179065
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  19179109 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 19179065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 20455893 - 20455937
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||||||||||||| | | |||||||||||||||||| ||||||    
T  20455893 gagcttagctcaattggtatggacaatgcataatatatgcaaggt 20455937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 40099442 - 40099398
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  40099442 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 40099398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 20103513 - 20103437
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaa 174  Q
    ||||||| |||| || | |||||||||||||||||| |||||||| |||  ||||||||| |||||||||| |||||    
T  20103513 gagcttaactcagttggtaaggacaatgcataatatttacaaggtccggggttcgaaccccagacaccaccaaaaaa 20103437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 46987088 - 46987164
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaa 174  Q
    |||||||||||| || | |||||||||||||||||||| |||||| |||  |||||||||  ||||||||| |||||    
T  46987088 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaaccccggacaccacccaaaaa 46987164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 6384871 - 6384930
Alignment:
Q  116 aaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||||||||||| ||||||  ||  |||||||||||||||||||| ||||||    
T  6384871 aaggacaatgcataatatatgcaaggtctggggttcgaaccctagacaccaccaaaaaaa 6384930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 18714451 - 18714532
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaagaggt 180  Q
    ||||||||||| || | |||||||||||||||||||| |||||| |||  ||| |||||   |||||||| |||||||||||    
T  18714451 agcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcaaaccccgtacaccaccaaaaaaagaggt 18714532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 8879785 - 8879748
Alignment:
Q  119 gacaatgcataatatatacaaggttcggtattcgaacc 156  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  8879785 gacaatgcataatatatgcaaggttcgggattcgaacc 8879748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Original strand, 24991783 - 24991840
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaac 155  Q
    |||||||||||| || | |||||||||||||||||||| |||| | ||| ||||||||    
T  24991783 gagcttagctcagttggtaaggacaatgcataatatatgcaagatacgggattcgaac 24991840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 5352331 - 5352375
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | ||||||||| |||||||||||||||||    
T  5352331 gagcttagctcagttggtaaggacaatacataatatatacaaggt 5352375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 8615025 - 8615069
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  8615025 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 8615069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 21050281 - 21050237
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  21050281 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 21050237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 27263363 - 27263411
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaaccctagacacca 166  Q
    |||||||||||||||||| ||||||||||  ||||||||| || |||||    
T  27263363 ggacaatgcataatatatgcaaggttcggagttcgaaccccagccacca 27263411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 32896522 - 32896454
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||| |||| || | ||||||||||||||||||||||||| || ||  ||||||||  |||||||||    
T  32896522 agcttaactcagttgggaaggacaatgcataatatatacaagatttggggttcgaacctcagacaccac 32896454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 174
Target Start/End: Original strand, 35473954 - 35474030
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaa 174  Q
    ||||||||||||||| | ||||| |||||||||||||| |||||||| |  |||||||||  ||||||||| |||||    
T  35473954 gagcttagctcaattggtaaggataatgcataatatatgcaaggttcagggttcgaaccccggacaccaccaaaaaa 35474030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 17283953 - 17284022
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||| || | |||||||||||||||||||| |||||| | |  |||||||||| ||||||||    
T  17283953 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccctggacaccac 17284022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 19262966 - 19262889
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| ||   ||||||||||||||| |||| ||| ||||||  ||||||||| |||||||||| ||||||    
T  19262966 gagcttagctcagttgataaggacaatgcataacatatgcaaagttcggggttcgaaccccagacaccaccaaaaaaa 19262889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 21638115 - 21638192
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    ||||||||||||||| | | ||||||||||| |||||| |||||| |||  |||||||||  ||||||||| ||||||    
T  21638115 gagcttagctcaattggtacggacaatgcatgatatatgcaaggtccggggttcgaaccccggacaccaccaaaaaaa 21638192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 167
Target Start/End: Complemental strand, 45190308 - 45190259
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||||||||| |||||||||| |||| |||||||| ||||||    
T  45190308 ggacaatgcataatatatgcaaggttcgggattcaaaccctagccaccac 45190259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 38448925 - 38448855
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccacc 168  Q
    |||||||||||| || | |||||||||||||||||||| |||||| |||  |||||| ||  |||||||||    
T  38448925 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtccggggttcgaatcccggacaccacc 38448855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 5907801 - 5907878
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | |||||||||||||||||||| |||||| | |  ||| |||||  ||||||||| ||||||    
T  5907801 gagcttagctcagttggcaaggacaatgcataatatatgcaaggtccagggttcaaaccccggacaccaccaaaaaaa 5907878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 47528506 - 47528429
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | |||||||||||||||||||  |||||| ||   |||||||||  ||||||||| ||||||    
T  47528506 gagcttagctcagttggtaaggacaatgcataatatacgcaaggtccgaggttcgaaccccggacaccaccaaaaaaa 47528429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 156
Target Start/End: Original strand, 11913754 - 11913790
Alignment:
Q  120 acaatgcataatatatacaaggttcggtattcgaacc 156  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  11913754 acaatgcataatatatacaaggttcgggattcaaacc 11913790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 17396710 - 17396778
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacacca 166  Q
    |||||||||||| ||   |||||||||||||||||||| ||||||| ||   |||||||| ||||||||    
T  17396710 gagcttagctcagttgacaaggacaatgcataatatattcaaggtttggggctcgaacccaagacacca 17396778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 20372966 - 20372922
Alignment:
Q  100 gcttagctcaatttgaaaggacaatgcataatatatacaaggttc 144  Q
    ||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  20372966 gcttaactcaattggaaaggacaatgtataatatatgcaaggttc 20372922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 27127226 - 27127270
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | ||||| |||||||||||||||||||||    
T  27127226 gagcttagctcagttagtaaggataatgcataatatatacaaggt 27127270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 47719166 - 47719086
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaagag 178  Q
    ||||||| |||| || | ||||| |||||||||||||| ||||||||||  |||||| ||  | ||||||| |||||||||    
T  47719166 gagcttaactcagttggtaaggataatgcataatatatgcaaggttcggagttcgaatcccggccaccaccaaaaaaagag 47719086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 25391 - 25470
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaaga 177  Q
    ||||||| |||| || | |||||||||||||||||||| |||||| | |  ||||||||| |||||||||| ||||||||    
T  25391 gagcttaactcagttggtaaggacaatgcataatatatgcaaggtccagggttcgaaccccagacaccaccaaaaaaaga 25470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 52119378 - 52119437
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccc 157  Q
    |||||||||||| || | |||||||||||||||||||| ||||||||||  |||||||||    
T  52119378 gagcttagctcagttggtaaggacaatgcataatatatgcaaggttcggggttcgaaccc 52119437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 29631188 - 29631265
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | | |||||||||||||||||| |||||||||| |||| |||||  | ||||||| ||||||    
T  29631188 gagcttagctcagttggtatggacaatgcataatatatgcaaggttcgggattcaaaccccggccaccaccaaaaaaa 29631265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 35191874 - 35191797
Alignment:
Q  100 gcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaaga 177  Q
    |||||||||| || | |||||||||||||||||||| ||||||  ||  ||||||||| ||||||| || ||||||||    
T  35191874 gcttagctcagttggtaaggacaatgcataatatatgcaaggtctggggttcgaaccccagacaccgccaaaaaaaga 35191797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 17507737 - 17507681
Alignment:
Q  119 gacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    ||||||||||||||||| |||||||||| ||||||||||  | ||||||| ||||||    
T  17507737 gacaatgcataatatatgcaaggttcgggattcgaacccgggccaccacccaaaaaa 17507681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 4216440 - 4216382
Alignment:
Q  116 aaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||||||||||| ||||| ||||  |||||||||| ||||||||| ||||||    
T  4216440 aaggacaatgcataatatatgcaagg-tcggggttcgaaccctggacaccaccaaaaaaa 4216382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 10926472 - 10926519
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatatacaaggttcgg 146  Q
    ||||||||||| || | |||||||||||||||||||| ||||||||||    
T  10926472 agcttagctcagttggtaaggacaatgcataatatatgcaaggttcgg 10926519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 175
Target Start/End: Complemental strand, 37376631 - 37376572
Alignment:
Q  116 aaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||||||||||||||| |||| | |||| |||| |||||| ||| |||||||    
T  37376631 aaggacaatgcataatatatacaaagttcaggattcaaaccttagacatcacagaaaaaa 37376572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 41817521 - 41817580
Alignment:
Q  118 ggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaaga 177  Q
    |||||||||||||||||| |||||| |||  ||| |||||||| ||||||| ||||||||    
T  41817521 ggacaatgcataatatatgcaaggtccggggttcaaaccctagccaccaccaaaaaaaga 41817580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 47377408 - 47377361
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcg 145  Q
    ||||||| |||| || | ||||||||||||||||||||||||||||||    
T  47377408 gagcttaactcagttggtaaggacaatgcataatatatacaaggttcg 47377361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 16980413 - 16980367
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttc 144  Q
    |||||||||||| || | |||||||||||||||||||| ||||||||    
T  16980413 gagcttagctcagttggtaaggacaatgcataatatatgcaaggttc 16980367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 53207972 - 53208042
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccacc 168  Q
    |||||||||||| || | |||| ||||||||||||||| ||||||  ||  |||||||||| |||||||||    
T  53207972 gagcttagctcagttggtaagggcaatgcataatatatgcaaggtctggggttcgaacccttgacaccacc 53208042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 1149128 - 1149059
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||| || | |||||||||||||||||||| ||||||   |  |||||||||| ||||||||    
T  1149128 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtctagggttcgaaccctggacaccac 1149059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 25505760 - 25505684
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    ||||||| |||| |||| |||||||||||||||||||| ||||||  ||  |||||||||  ||||||||| ||||||    
T  25505760 gagcttaactcagtttgtaaggacaatgcataatatatgcaaggtctggggttcgaaccc-ggacaccaccaaaaaaa 25505684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 38573610 - 38573553
Alignment:
Q  120 acaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaaga 177  Q
    |||||||||||||||||||||||   | ||||||||||  ||||||||| ||||||||    
T  38573610 acaatgcataatatatacaaggtctaggattcgaaccccggacaccaccaaaaaaaga 38573553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 13992675 - 13992715
Alignment:
Q  100 gcttagctcaatttgaaaggacaatgcataatatatacaag 140  Q
    |||||||||| || | |||||||||||||||||||||||||    
T  13992675 gcttagctcagttggtaaggacaatgcataatatatacaag 13992715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 33224726 - 33224690
Alignment:
Q  99 agcttagctcaatttgaaaggacaatgcataatatat 135  Q
    |||||||||||||| | ||||||||||||||||||||    
T  33224726 agcttagctcaattggtaaggacaatgcataatatat 33224690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 46469279 - 46469323
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  46469279 gagcttagctcagttggtaaggacaatgcataatatattcaaggt 46469323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 2053028 - 2053097
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    ||||| ||||||||| | ||||||||||||||| ||||||||||| |||  |||||||||| | ||||||    
T  2053028 gagctcagctcaattggtaaggacaatgcataaaatatacaaggtccggagttcgaaccctggccaccac 2053097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 22901979 - 22902030
Alignment:
Q  116 aaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||||||||||| ||| |||||| ||||||||||  ||||||||    
T  22901979 aaggacaatgcataatatatgcaaagttcgggattcgaacccaggacaccac 22902030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 26400271 - 26400224
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcg 145  Q
    ||||||||||||||| | |||||||||||||| ||||||||| |||||    
T  26400271 gagcttagctcaattggtaaggacaatgcatagtatatacaaagttcg 26400224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 6624778 - 6624855
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccaccgaaaaaa 175  Q
    |||||||||||| || | | |||||||||||||||||| |||||| |||  |||||||||  | ||||||| ||||||    
T  6624778 gagcttagctcagttggcatggacaatgcataatatatgcaaggtccggggttcgaaccccggccaccaccaaaaaaa 6624855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 36321553 - 36321508
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggtt 143  Q
    |||||||||||| || | |||||||||||||||||||| |||||||    
T  36321553 gagcttagctcagttggtaaggacaatgcataatatatgcaaggtt 36321508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 37932332 - 37932401
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    |||||||||||| || | | |||||||||||||||||| |||||| |||  |||||||||| | ||||||    
T  37932332 gagcttagctcagttggtatggacaatgcataatatatgcaaggtccggggttcgaaccctggccaccac 37932401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 16133124 - 16133080
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  16133124 gagcttagctcagttggtaaggacaatgcataatatatgcaaggt 16133080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 39914903 - 39914947
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    ||||||| ||||||| | |||||||||||||||||||| ||||||    
T  39914903 gagcttaactcaattggtaaggacaatgcataatatatgcaaggt 39914947  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 64220 - 64279
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcggtattcgaaccc 157  Q
    ||||||||||||| | | | |||||||||||||||||| |||||| ||| ||||||||||    
T  64220 gagcttagctcaactggtatggacaatgcataatatatgcaaggtccgggattcgaaccc 64279  T

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Target: scaffold1619 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1619
Description:

Target: scaffold1619; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 1054 - 1102
Alignment:
Q  119 gacaatgcataatatatacaaggttcggtattcgaaccctagacaccac 167  Q
    ||||||||||||||||| |||||| ||| |||| ||||| |||||||||    
T  1054 gacaatgcataatatatgcaaggtccgggattcaaaccccagacaccac 1102  T

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Target: scaffold1379 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 1638 - 1686
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggttcgg 146  Q
    ||||||||||||||| | | |||||||||||| ||||| ||||||||||    
T  1638 gagcttagctcaattagtatggacaatgcatagtatatgcaaggttcgg 1686  T

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Target: scaffold0198 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 19263 - 19307
Alignment:
Q  120 acaatgcataatatatacaaggttcggtattcgaaccctagacac 164  Q
    ||||||||||| |||||||||||||||  |||||||||| |||||    
T  19263 acaatgcataaaatatacaaggttcggatttcgaacccttgacac 19307  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 52128 - 52084
Alignment:
Q  100 gcttagctcaatttgaaaggacaatgcataatatatacaaggttc 144  Q
    ||||| ||||||| |||||||||||| ||||||||| ||||||||    
T  52128 gcttaactcaattggaaaggacaatgtataatatatgcaaggttc 52084  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 42393 - 42349
Alignment:
Q  98 gagcttagctcaatttgaaaggacaatgcataatatatacaaggt 142  Q
    |||||||||||| || | |||||||||||||||||||| ||||||    
T  42393 gagcttagctcagttgggaaggacaatgcataatatatgcaaggt 42349  T

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