View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_34 (Length: 339)
Name: NF2749_low_34
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 12507974 - 12507647
Alignment:
| Q |
14 |
aatatgatatagacacatataccatatatattcgacaggacggacacaaattatcatattattcgtgcttgtggacacttatttacatttctatat--gt |
111 |
Q |
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| T |
12507974 |
aatatgatatagacacatataccatatatattcgacaggacggacacaaattatcatattattcgtgcttgtggacactcatttacatttctatataagt |
12507875 |
T |
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| Q |
112 |
ttatttattgaagtgctctctcacatggtctctcatcttttggaagttgacacactccatgttgacttcatgagactgtagttggtttttgttctctctt |
211 |
Q |
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| T |
12507874 |
ttatttattgaagtgctctctcacatggtccctcatcttttggaagttgacacactccatgctgactgcatgagactgtagttggtttttgttttctctt |
12507775 |
T |
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| Q |
212 |
tttatttttccattgcaccaaacnnnnnnncaatgaaatatatcaaagttttattctcatacaaaattaattaatttttgtttatcaaatatagtttagt |
311 |
Q |
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| T |
12507774 |
tttatttttccattgcaccaaacaaaaaaacaatgaaatatatcaaagttttattttcatacaaaattaattaatttttgtttatcaaatatagtttagt |
12507675 |
T |
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| Q |
312 |
gattagaatattacactttttaaatgta |
339 |
Q |
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| T |
12507674 |
gattagaatattacactttttaaatgta |
12507647 |
T |
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