View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_35 (Length: 339)
Name: NF2749_low_35
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 39240786 - 39241087
Alignment:
| Q |
18 |
atttaagctatgagtttgaattgttttgttttctatatcatattgtttggtagaaaactctctcaaccctcccttctgttaaatgcaagatggcaaaatc |
117 |
Q |
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| T |
39240786 |
atttaagctatgagtttgaattgttttgttttctatatcatattgtttggtagaaaactctctcaaccctcccttctgttaaatgcaagatggcaaaat- |
39240884 |
T |
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| Q |
118 |
tgcatacactgtggcgaccggcagtggaaccactggagaggaaaagaaactaactcttcctgaaatagcagttggaattgatattggcacctcacaatgc |
217 |
Q |
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| T |
39240885 |
---atacactgtggcaactggcagtggaaccactggagaggaaaagaaactagcttttcctgaaatagcagttggaattgatattggcacctcacaatgc |
39240981 |
T |
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| Q |
218 |
agtgtagctgtatggaatggttcctaagtggagattttgaaaaacaaaagaaatcagaagcttataaaatcatttgtgactttcaaagatgaatcccctt |
317 |
Q |
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|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39240982 |
agtgtagcagtatggaatggttcccaagtggagattttgaaaaacaaaagaaatcagaagcttataaaatcatttgtgactttcaaagatgaatcccctt |
39241081 |
T |
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| Q |
318 |
ctagta |
323 |
Q |
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|||||| |
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| T |
39241082 |
ctagta |
39241087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 171 - 319
Target Start/End: Original strand, 807280 - 807428
Alignment:
| Q |
171 |
ctcttcctgaaatagcagttggaattgatattggcacctcacaatgcagtgtagctgtatggaatggttcctaagtggagattttgaaaaacaaaagaaa |
270 |
Q |
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| T |
807280 |
ctcttcctgaaatagcgattggaattgatattggcacctcacaatgtagcgttgctgtgtggaatggctccgaagtggagcttttgaaaaacaaaagaaa |
807379 |
T |
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| Q |
271 |
tcagaagcttataaaatcatttgtgactttcaaagatgaatccccttct |
319 |
Q |
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| T |
807380 |
tcagaagcttatgaagtcatttgtgacattcaaagatgaagctccttct |
807428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 171 - 259
Target Start/End: Complemental strand, 44728768 - 44728680
Alignment:
| Q |
171 |
ctcttcctgaaatagcagttggaattgatattggcacctcacaatgcagtgtagctgtatggaatggttcctaagtggagattttgaaa |
259 |
Q |
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| T |
44728768 |
ctcttcctgaaataacacttggaattgacattggcagatcaccatgctgtgtttctgtgtggaatggttccagagtggagatttggaaa |
44728680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 47842114 - 47842146
Alignment:
| Q |
175 |
tcctgaaatagcagttggaattgatattggcac |
207 |
Q |
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| T |
47842114 |
tcctgaaatagcaattggaattgatattggcac |
47842146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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