View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2749_low_4 (Length: 692)

Name: NF2749_low_4
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2749_low_4
NF2749_low_4
[»] chr4 (5 HSPs)
chr4 (13-674)||(24315240-24315922)
chr4 (318-377)||(19482739-19482798)
chr4 (318-377)||(22234819-22234878)
chr4 (318-364)||(3947714-3947760)
chr4 (318-380)||(29205528-29205590)
[»] chr7 (3 HSPs)
chr7 (329-380)||(30606011-30606062)
chr7 (316-364)||(27093366-27093414)
chr7 (316-364)||(27184887-27184935)
[»] chr6 (1 HSPs)
chr6 (282-327)||(4013134-4013179)
[»] chr2 (1 HSPs)
chr2 (318-379)||(26769582-26769643)
[»] chr8 (1 HSPs)
chr8 (317-377)||(1926057-1926117)


Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 13 - 674
Target Start/End: Original strand, 24315240 - 24315922
Alignment:
Q  13 gaaaacaagtggcatttaggaattatgatttcaagaaaatagcaaaaccattacttgaacaacaagcaaatggctctgatgagaaaacatgatcaaggtc 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24315240 gaaaagaagtggcatttaggaattatgatttcaagaaaatagcaaaaccattacttgaacaacaagcaaatggctctgatgagaaaacatgatcaaggtc 24315339  T
Q  113 gaggctaatggttgatagcacatgatagatatttcagtctcagttcnnnnnnnatgaccatctaatataatttgttagatgcattagcattttcaacaag 212  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||       |||||||||||| ||||||||||||||||||||||||||||||||||    
T  24315340 gaggctaatggttgataccacatgatagatatttcagtctcagttctttttttatgaccatctaaaataatttgttagatgcattagcattttcaacaag 24315439  T
Q  213 aagctgatgaaacatataatatttgcgtctataacataatataacattacatagattnnnnnnnncatacacacctatgaagcacggacacatacacaga 312  Q
    |||||||||||||||| ||||||||||||  |||||||| |||||||||||||||||        |||||||||||||||||||| |||||| | | |||    
T  24315440 aagctgatgaaacatacaatatttgcgtc--taacataacataacattacatagattaaaaaaaacatacacacctatgaagcacagacacagataaaga 24315537  T
Q  313 tactagacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagatactc------------attattatatatcatat 400  Q
    || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||            |||||||||||||||||    
T  24315538 tattagacacgacacgtatccgacactaggacacaatt-atccgaggattgtttgtgtttcatagatactcattattattattattattatatatcatat 24315636  T
Q  401 atattgtgctatgaaatagacacacacatagaagcatggtaacacactacaataatacacttaaatcccaaaagaacag------------acatacaca 488  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||            |||||||||    
T  24315637 atattgtgatatgaaatagacacgcacatagaagcatggtaacacactacaataataaacttaaatcccaaaagaacagacatacatacatacatacaca 24315736  T
Q  489 catatacatactatgatttgaaatagacacaatttaaggaaacaaactgaagagattatacacattcagtcggtgccttcaatttcaacaaccctaatgt 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24315737 catatacatactatgatttgaaatagacacaatttaaggaaacaaactgaagagattatacacattcagtcggtgccttcaatttcaacaaccctaatgt 24315836  T
Q  589 tcctcccaccagaactagaagattgttgaatcttaggaacagtgacaacaagaacaccattaaccatattcgctttaagctcttga 674  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24315837 tcctcccaccagaaccagaagattgttgaatcttcggaacagtgacaacaagaacaccattaaccatattcgctttaagctcttga 24315922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 19482739 - 19482798
Alignment:
Q  318 gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag 377  Q
    |||||||||||| ||||||||| |||||||  |||||||||||||||| ||| |||||||    
T  19482739 gacacgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 22234878 - 22234819
Alignment:
Q  318 gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag 377  Q
    |||||||||||| |||||||| ||||||||  ||||||||| |||||| ||| |||||||    
T  22234878 gacacgacacgtgtccgacaccaggacacagctaatccgagaagtgttcgtgcttcatag 22234819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 364
Target Start/End: Complemental strand, 3947760 - 3947714
Alignment:
Q  318 gacacgacacgtatccgacactaggacacaattaatccgaggagtgt 364  Q
    |||||||||||| |||||||| ||||||||  |||||||||||||||    
T  3947760 gacacgacacgtgtccgacaccaggacacacctaatccgaggagtgt 3947714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 29205528 - 29205590
Alignment:
Q  318 gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagata 380  Q
    |||||||||| | ||||||||| ||||||   |||||||||||||||| ||| ||||||||||    
T  29205528 gacacgacacatgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatagata 29205590  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 329 - 380
Target Start/End: Complemental strand, 30606062 - 30606011
Alignment:
Q  329 tatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagata 380  Q
    |||||||||| ||||||||  ||||||||||||| ||||||||| |||||||    
T  30606062 tatccgacaccaggacacacataatccgaggagtatttgtgttttatagata 30606011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 27093414 - 27093366
Alignment:
Q  316 tagacacgacacgtatccgacactaggacacaattaatccgaggagtgt 364  Q
    ||||||||||| || |||||||||||||||||  |||||||| ||||||    
T  27093414 tagacacgacatgtgtccgacactaggacacacctaatccgatgagtgt 27093366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 27184887 - 27184935
Alignment:
Q  316 tagacacgacacgtatccgacactaggacacaattaatccgaggagtgt 364  Q
    ||||||||||| || |||||||||||||||||  |||||||| ||||||    
T  27184887 tagacacgacatgtgtccgacactaggacacacctaatccgatgagtgt 27184935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 4013179 - 4013134
Alignment:
Q  282 cacacctatgaagcacggacacatacacagatactagacacgacac 327  Q
    |||||||||||||||  ||||||||||| | |||||||||||||||    
T  4013179 cacacctatgaagcattgacacatacacgggtactagacacgacac 4013134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 26769582 - 26769643
Alignment:
Q  318 gacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatagat 379  Q
    |||||||||||| ||||||||| ||||||   |||||||||||||||  ||| |||||||||    
T  26769582 gacacgacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 1926057 - 1926117
Alignment:
Q  317 agacacgacacgtatccgacactaggacacaattaatccgaggagtgtttgtgtttcatag 377  Q
    |||||||| |||||||||||||   |||||| |||||  ||||||| ||||||||||||||    
T  1926057 agacacgatacgtatccgacaccgagacacacttaatatgaggagtatttgtgtttcatag 1926117  T

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