View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_40 (Length: 291)
Name: NF2749_low_40
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 12507651 - 12507377
Alignment:
| Q |
1 |
atgtaaatatttagagagtcgcgagtttaaaccaatacatttataaaaagatgtccatcaagtaaactatgctcatataccaactactttttctttattt |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12507651 |
atgtaaatatttagagagtcacgagtttaaaccaatacatttataaatagatgtccatcaagtaaactatgctcatataccaactactttttctttattt |
12507552 |
T |
|
| Q |
101 |
gtgtataatgtgtaa--tgccaaagtaacatatttttgggatatatggagtaccaaagtagagcacaaatcatcaaaacgaaaataaattaaagtacacc |
198 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
12507551 |
gtgtataatgtgtaatgtgccaaagtaacatatttttgggatatatggagtaccaaagtagagcacaaatcatcaaaacgaaaa-----taaagtacacc |
12507457 |
T |
|
| Q |
199 |
ttatctcaaattttgacatgacacgttataacttataagaactaggaaacttagatagaagactagaaacaaaggataaa |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12507456 |
ttatctcaaattttgacatgacacgttataacttataagaactaggaaacttagatagaagactagaaacaaaggataaa |
12507377 |
T |
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