View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_46 (Length: 251)
Name: NF2749_low_46
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52242614 - 52242387
Alignment:
| Q |
1 |
agacgttgattttaatgatgtgtttgggggaccgccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtgtagttggcctcct |
100 |
Q |
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| T |
52242614 |
agacgttgattttaatgatgtgtttgggggaccaccgcggaggaggtcatcggtgagtggaggagaggaaggtgaaacgggttggtgtagttggcctcct |
52242515 |
T |
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| Q |
101 |
ccgcctgagagcgagaaaccggtgtttggtgaggatagtggagttaggaggagaagaaaaggaaaagatttctttgatgatatatttggaggagaagatt |
200 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52242514 |
ccgcctgagagcgagaaaccagtgtttggtgaggatagtggagctaggaggagaagaaaaggaaaagatttttttgatgatatatttggaggagaagatt |
52242415 |
T |
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| Q |
201 |
cacagtctcaaactccaagtgggtgttc |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
52242414 |
cacagtctcaaactccaagtgggtgttc |
52242387 |
T |
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