View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2749_low_5 (Length: 678)
Name: NF2749_low_5
Description: NF2749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2749_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 135 - 580
Target Start/End: Complemental strand, 41561152 - 41560707
Alignment:
| Q |
135 |
actatgagttatttcttgagttcgaatctagtttggaacatgcaacattatttaatctcttgaaggagtgttttatcacccatttcatttctagtgtagt |
234 |
Q |
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| T |
41561152 |
actatgagttatttcttgggttcgaatctagtttgagacatacaatattatttaatctcttgaaggagtgttttatcacccatttcgtttctagtgtagt |
41561053 |
T |
|
| Q |
235 |
aatcaaaacatagaaaatagaagaatatgaacaacaaaagtttatctgatttaactttaaagacctactatgaggagagagagcaacgaagacttactca |
334 |
Q |
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| T |
41561052 |
aatgaaaacatagaaaatagaagaatatgaacaccaaaagtttatgtgatttaactttaaagacctactatgaggagagagagcaacgaagacttactca |
41560953 |
T |
|
| Q |
335 |
agcccctttcaacattctattttcactctgccaatgatctctcaatctctctaattttcttttcacaagtagagtttacatgaattgtctcacattacac |
434 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41560952 |
agcccctttcaacattctattttcactctgccaatgatctctcaatctctctaattttcttttcacaagtagagtttacatgaattgtctcacattacac |
41560853 |
T |
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| Q |
435 |
atcaaatgtttcccatggattccctcacgaaattacccacgtagaaatactgtatgtttcttatatagactcctgaatacaaacattaactcataattga |
534 |
Q |
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| T |
41560852 |
atcaaatgtttcccatggattccctcacgaaattacccacgtagaaatactgtatgtttcttatatagactcctgaatacaaacattaactcataattga |
41560753 |
T |
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| Q |
535 |
cataagtgaactgctatcatgttatggccagtaactgatttgtaac |
580 |
Q |
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| T |
41560752 |
cataagtgaactgttatcatgttatggccagtaactgatttgtaac |
41560707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 41561966 - 41561844
Alignment:
| Q |
14 |
caaagggattggatacggtattctgtttttgtccataaatatatgannnnnnnattttgtctcttttaaatccacttcaatttttccttaaaaaatagct |
113 |
Q |
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|||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
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| T |
41561966 |
caaagggagtggatacggtattttgtttttgtccataaatatatgatttttt-attttgtcttttttaaacccacttcaatttttccttaaaaaatagct |
41561868 |
T |
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| Q |
114 |
cacttcaaataaaccataaatact |
137 |
Q |
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| T |
41561867 |
cacttcaaataaaccataaatact |
41561844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 620 - 661
Target Start/End: Complemental strand, 41560679 - 41560638
Alignment:
| Q |
620 |
atatgcttataactaaaacccgagtgctacaagcctacaata |
661 |
Q |
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| T |
41560679 |
atatgcttataactaaaacccgagtgctacaagcctacaata |
41560638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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