View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_high_14 (Length: 264)
Name: NF2750_high_14
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 4337756 - 4337676
Alignment:
| Q |
1 |
ccatccttttatgagtaccaccatgtttccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataact |
81 |
Q |
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| T |
4337756 |
ccatccttttatgagtaccaccatgtttccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataact |
4337676 |
T |
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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 4131906 - 4131989
Alignment:
| Q |
166 |
tccaagattgactgcattttgaatgctttcacttaaaacatggctaatttgcacctgcaaattctgcttaagtatactattaat |
249 |
Q |
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| T |
4131906 |
tccaaaattgtctgcattttgaatgctttcacttaaaacatggctgatttccatttgcaaattctgtttaagtatacaattaat |
4131989 |
T |
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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 4122035 - 4122110
Alignment:
| Q |
28 |
tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactgacaaatacattttttatgagg |
103 |
Q |
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| T |
4122035 |
tccaaattgaatgttaaaacatttttaaagcagtaattaaaaaattagataactaaaaaatacatattttgtgagg |
4122110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 4318584 - 4318658
Alignment:
| Q |
132 |
atacaatgaattcttcttgcatcatactaagatttccaagattgactgcattttgaatgctttcacttaaaacatg |
207 |
Q |
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| T |
4318584 |
atacaatgaattcttcttgaagcatactgaaatttccaagattggctgca-tttcaatgccttcatttaaaacatg |
4318658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 4131771 - 4131835
Alignment:
| Q |
28 |
tccaaattgaatgtttaaacagttttaaagcaataactaaacaattagataactgacaaatacatttt |
95 |
Q |
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| T |
4131771 |
tccaaattgaatgtttaat---tttaaaagcaataattaaacagtgagataactaacaaatacatttt |
4131835 |
T |
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