View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_high_16 (Length: 244)
Name: NF2750_high_16
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_high_16 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 47810922 - 47811165
Alignment:
| Q |
1 |
tcaacacaaaattaacaatattcatgatctgctttatgcaggattcattgatcaaatccctaaatataaatataaaaattgcaaatttacatcaaacatg |
100 |
Q |
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| T |
47810922 |
tcaacacaaaattaacaatattcatgatctgctttatgcaggattcattgatcaaatccctaaatataaatataaaaattgcaaatttacatcaaacatg |
47811021 |
T |
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| Q |
101 |
gccatgaaaggacacttcatttcnnnnnnnnnnnnnnacaaaagaaaggacacttcatctttgcctataaaagctcattcaaatatctaaaccttcaatc |
200 |
Q |
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| T |
47811022 |
gccatgaaaggacacttcatttctttttttattttttacaaaagaaaggacacttcatctttgcctataaaagctcattcaaatatctaaaccttcaatc |
47811121 |
T |
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| Q |
201 |
atcccattaatattgttcctcaaactgcaatatatatggctact |
244 |
Q |
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| T |
47811122 |
atcccattaatattgttcctcaaactgcaatatatatggctact |
47811165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 47787751 - 47787803
Alignment:
| Q |
152 |
acttcatctttgcctataaaagctcattcaaatatctaaaccttcaatcatcc |
204 |
Q |
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| T |
47787751 |
acttcatctttgcctataaaagctcattcatatgtctaaaccttcaatcatcc |
47787803 |
T |
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