View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_high_19 (Length: 223)
Name: NF2750_high_19
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 9219471 - 9219257
Alignment:
| Q |
1 |
caatatttagttacagttacctaagtttaagtcgaactcaagattactaaaagggccgaagggttaagaccaggnnnnnnntatgattaaagtattcagc |
100 |
Q |
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| T |
9219471 |
caatttttagttacatttatctaactttaagttgaactccagactactaaaagggtcgaagggttaagaccaggaaaaaaatatgattaaggtattcagc |
9219372 |
T |
|
| Q |
101 |
atgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9219371 |
atgcatgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttg |
9219272 |
T |
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| Q |
201 |
tggcggtttcatctc |
215 |
Q |
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||||||||||||||| |
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| T |
9219271 |
tggcggtttcatctc |
9219257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 211
Target Start/End: Complemental strand, 9162459 - 9162352
Alignment:
| Q |
104 |
catgttagctattgatattaatttataaaacaattcattaacttgctacaacacaattgaaatgcaggatcaagtgctggactaatagtcctatttgtgg |
203 |
Q |
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|||||||||||| ||||||| |||||| ||||||| || || | || ||| ||| || |||||||||| ||||||||||| | || | |||||||||| |
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| T |
9162459 |
catgttagctatcgatattattttatagaacaatttatgaattgacttcaatacatttcaaatgcaggagcaagtgctggaatcattattctatttgtgg |
9162360 |
T |
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| Q |
204 |
cggtttca |
211 |
Q |
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|| ||||| |
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| T |
9162359 |
cgatttca |
9162352 |
T |
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