View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2750_high_6 (Length: 381)
Name: NF2750_high_6
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 36823617 - 36823850
Alignment:
| Q |
22 |
attgggtactactgtattccnnnnnnnctctgatagcctactttgttgtgcctcttaagaaatttgattgctatataagtttatcaccctcatgttaaaa |
121 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36823617 |
attgggtactactgtattcctttttttctctgatagcctactttgttgtgcctcttaagaaatttgattgctatataagtttatcaccctcatgttaaaa |
36823716 |
T |
|
| Q |
122 |
gtaaatcgattagttcaaaatgaaaactagcttaggctgccctctcctccttatgtgaatgttaaaagaaatgacaacaatatatacccttgaggtcttg |
221 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
36823717 |
gtaaatcgattagttcaaaatgaaaaccagcttaggctgccctctcctccttctgtgaatgttaaaagaaatgacaacaatatatactcttgaggtctag |
36823816 |
T |
|
| Q |
222 |
gtagaactcctctcggtcaaataactacattaat |
255 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
36823817 |
gtagaactcctctcggtcaaataactacgttaat |
36823850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 312 - 363
Target Start/End: Original strand, 36823905 - 36823956
Alignment:
| Q |
312 |
aaaatattcagggatgacatttttactaaaccaaccttattaactatctgtg |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36823905 |
aaaatattcagggatgacatttttactaaaccaaccttaataactatctgtg |
36823956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 358
Target Start/End: Original strand, 34782533 - 34782566
Alignment:
| Q |
325 |
atgacatttttactaaaccaaccttattaactat |
358 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
34782533 |
atgacatttttactaaactaaccttattaactat |
34782566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University