View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2750_low_1 (Length: 763)

Name: NF2750_low_1
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2750_low_1
NF2750_low_1
[»] chr3 (4 HSPs)
chr3 (1-462)||(12404126-12404597)
chr3 (624-753)||(12404829-12404958)
chr3 (510-585)||(12404685-12404760)
chr3 (137-222)||(3041606-3041691)
[»] chr2 (2 HSPs)
chr2 (135-192)||(42467885-42467942)
chr2 (158-203)||(37494733-37494778)
[»] chr1 (4 HSPs)
chr1 (137-192)||(19808751-19808806)
chr1 (498-590)||(13643596-13643688)
chr1 (160-203)||(1327620-1327663)
chr1 (141-203)||(4364244-4364306)
[»] chr7 (1 HSPs)
chr7 (500-570)||(18037851-18037921)
[»] chr5 (2 HSPs)
chr5 (137-205)||(4483922-4483990)
chr5 (700-759)||(38727930-38727989)
[»] chr8 (5 HSPs)
chr8 (175-208)||(32817217-32817250)
chr8 (137-191)||(32409870-32409924)
chr8 (498-540)||(34085205-34085247)
chr8 (98-132)||(44961976-44962010)
chr8 (498-579)||(3137433-3137514)
[»] chr4 (2 HSPs)
chr4 (137-199)||(5078927-5078989)
chr4 (162-224)||(6986768-6986830)
[»] chr6 (4 HSPs)
chr6 (150-203)||(7712351-7712404)
chr6 (552-585)||(9213095-9213128)
chr6 (519-580)||(10008225-10008286)
chr6 (498-563)||(33607750-33607815)


Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 12404126 - 12404597
Alignment:
Q  1 attctttggtcattttattcgagaatggtatttgacatacaaatttgacaacaaattagtcaattaacgtagttcaaataagtggttaacacaatttagt 100  Q
    ||||||||||||||||| ||| |||||||||||  |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  12404126 attctttggtcattttagtcgggaatggtatttttcatacaaatttgacaacaaattagacgattaacgtagttcaaataagtggttaacacaatttagt 12404225  T
Q  101 ggatggataatgaatataacaaggtgtcacagttagcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaat 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404226 ggatggataatgaatataacaaggtgtcacagttagtatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaat 12404325  T
Q  201 ttgatttccaatttgtgtcaaaatgatacaacattttc----------aatgaatagtgttttctcacatgttacaattttggtgttggtgttgtagaat 290  Q
    ||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404326 ttgatttccaatttgtgtcaaaatgatacaacattttcaatggaatttaatgaatagtgttttctcacatgttacaattttggtgttggtgttgtagaat 12404425  T
Q  291 ggtcatcttggtttcctgttatcttgctatgatgctgaacttagctatgattcgcgaaccaatacctttctagcaaggtaaattttttatgattttcgat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404426 ggtcatcttggtttcctgttatcttgctatgatgctgaacttagctatgattcgcgaaccaatacctttctagcaaggtaaattttttatgattttcgat 12404525  T
Q  391 aatcacatgcttaattgggccatctcatggaatcaattatgtattaaattggttcacattggttatatattt 462  Q
    |||||||||||||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  12404526 aatcacatgcttaagtgtgtcatctcatggaatctattatgtattaaattggttcacattggttatatattt 12404597  T

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Target: chr3; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 624 - 753
Target Start/End: Original strand, 12404829 - 12404958
Alignment:
Q  624 tgtagatattgattaattgattgcttgttataggtatccatcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 723  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12404829 tgtagatattggttaattgattgcttgttataggtatccttcacatggaagaagagaagctagagagtgtggaattccatgggaaaggataagagcacct 12404928  T
Q  724 cctgttgatatctctccacatgatcttcat 753  Q
    ||||||||||||||||||||||||||||||    
T  12404929 cctgttgatatctctccacatgatcttcat 12404958  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 510 - 585
Target Start/End: Original strand, 12404685 - 12404760
Alignment:
Q  510 cataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaa 585  Q
    ||||||||||  |||||| |||||||||||||| | ||||| ||| |||||||  ||||||| |||||||||||||    
T  12404685 cataaataaactttttgtcttgaaagtataaattggttcttttgagcaagtaacgattacactactttttataaaa 12404760  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 3041606 - 3041691
Alignment:
Q  137 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaa 222  Q
    |||||||||||  ||||| ||||||||| ||||| || ||||||||| || ||||| || |  |||| |||| |||||||||||||    
T  3041606 catccactaaatgtaattaaccacatatgtgaacggtgttaaccatccaagttgttgtcgatttttgttttcaaatttgtgtcaaa 3041691  T

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Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 42467885 - 42467942
Alignment:
Q  135 agcatccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt 192  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||    
T  42467885 agcatccactaaacataattaaccacatatttgaactgcattaaccatctgaattgtt 42467942  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 37494778 - 37494733
Alignment:
Q  158 cacatatttgaactgtattaaccatctaaattgttatcaaaatttg 203  Q
    ||||||||||||||| |||||||||| ||||||||||| |||||||    
T  37494778 cacatatttgaactgcattaaccatccaaattgttatcgaaatttg 37494733  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 19808806 - 19808751
Alignment:
Q  137 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgtt 192  Q
    |||||||||||| ||||||||||||||||||||| || ||||||||| ||||||||    
T  19808806 catccactaaacgtaatttaccacatatttgaacggtgttaaccatccaaattgtt 19808751  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 498 - 590
Target Start/End: Complemental strand, 13643688 - 13643596
Alignment:
Q  498 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccactttttataaaatttta 590  Q
    ||||||| ||||||||| ||||||  |||| |||||| |||||| || | ||| |||  || |||| |||||||||||||| |||||||||||    
T  13643688 ggttaaggaattcataagtaaaaaaattgtcttgaaaatataaaccgttacttttgacaaattaattattacaccacttttaataaaatttta 13643596  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 1327663 - 1327620
Alignment:
Q  160 catatttgaactgtattaaccatctaaattgttatcaaaatttg 203  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||    
T  1327663 catagttgaactgtgttaaccatctaatttgttatcaaaatttg 1327620  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 4364306 - 4364244
Alignment:
Q  141 cactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg 203  Q
    |||| ||||||||| || ||||||||||| ||  ||||| |||||||||||| ||||||||||    
T  4364306 cactgaacataattaactacatatttgaattgcgttaactatctaaattgttgtcaaaatttg 4364244  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 570
Target Start/End: Original strand, 18037851 - 18037921
Alignment:
Q  500 ttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattaca 570  Q
    ||||||||| |||||||||||||||||| |||||| ||||||| | | ||| ||||||| |||||||||||    
T  18037851 ttaagaaatccataaataaaaattttgttttgaaaatataaattgttacttttgatcaaataataattaca 18037921  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 4483990 - 4483922
Alignment:
Q  137 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttgat 205  Q
    |||||||| |||||||||  ||||| ||||||||||| |||||||| | ||||||| ||||||||||||    
T  4483990 catccactgaacataattagccacacatttgaactgtgttaaccatgtcaattgttgtcaaaatttgat 4483922  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 700 - 759
Target Start/End: Complemental strand, 38727989 - 38727930
Alignment:
Q  700 ccatgggaaaggataagagcacctcctgttgatatctctccacatgatcttcatctcact 759  Q
    |||||||||||| |||||||||| ||||| ||||   ||||||||||||||||| |||||    
T  38727989 ccatgggaaaggctaagagcaccgcctgtcgatacgcctccacatgatcttcatatcact 38727930  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Complemental strand, 32817250 - 32817217
Alignment:
Q  175 ttaaccatctaaattgttatcaaaatttgatttc 208  Q
    ||||||||||||||||||||||||||||||||||    
T  32817250 ttaaccatctaaattgttatcaaaatttgatttc 32817217  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 191
Target Start/End: Original strand, 32409870 - 32409924
Alignment:
Q  137 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgt 191  Q
    ||||||||||||||||   | |||||||||||| |||||||||||||||| ||||    
T  32409870 catccactaaacataagcaagcacatatttgaattgtattaaccatctaatttgt 32409924  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 498 - 540
Target Start/End: Original strand, 34085205 - 34085247
Alignment:
Q  498 ggttaagaaattcataaataaaaattttgtgttgaaagtataa 540  Q
    |||||||||||||||||||||||| ||||| |||||| |||||    
T  34085205 ggttaagaaattcataaataaaaaatttgttttgaaaatataa 34085247  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 132
Target Start/End: Complemental strand, 44962010 - 44961976
Alignment:
Q  98 agtggatggataatgaatataacaaggtgtcacag 132  Q
    |||||||||||||||||||||| ||||||||||||    
T  44962010 agtggatggataatgaatataataaggtgtcacag 44961976  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 579
Target Start/End: Complemental strand, 3137514 - 3137433
Alignment:
Q  498 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttt 579  Q
    |||||||||||||| ||||| ||||||||| |||||| | |||   | | ||| |||||||||||| ||||||| |||||||    
T  3137514 ggttaagaaattcagaaatagaaattttgtcttgaaaatgtaagatgttacttttgatcaagtaattattacacaacttttt 3137433  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 199
Target Start/End: Complemental strand, 5078989 - 5078927
Alignment:
Q  137 catccactaaacataatttaccacatatttgaactgtattaaccatctaaattgttatcaaaa 199  Q
    |||| ||||||  ||||| |||| |||||||||||| |||||||||| |||||||| ||||||    
T  5078989 catctactaaatgtaattaaccatatatttgaactgcattaaccatccaaattgttgtcaaaa 5078927  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 224
Target Start/End: Original strand, 6986768 - 6986830
Alignment:
Q  162 tatttgaactgtattaaccatctaaattgttatcaaaatttgatttccaatttgtgtcaaaat 224  Q
    ||||||||||| |||||||||||||||| || || ||||||| | || ||||| |||||||||    
T  6986768 tatttgaactgcattaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaat 6986830  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 7712351 - 7712404
Alignment:
Q  150 taatttaccacatatttgaactgtattaaccatctaaattgttatcaaaatttg 203  Q
    ||||| |||||||||||||||| | ||||||||||||| |||| || |||||||    
T  7712351 taattaaccacatatttgaactatgttaaccatctaaactgttgtcgaaatttg 7712404  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 585
Target Start/End: Original strand, 9213095 - 9213128
Alignment:
Q  552 tgatcaagtaataattacaccactttttataaaa 585  Q
    |||||||||||||||||||| |||||||||||||    
T  9213095 tgatcaagtaataattacactactttttataaaa 9213128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 580
Target Start/End: Complemental strand, 10008286 - 10008225
Alignment:
Q  519 aaattttgtgttgaaagtataaatcgattcttctgatcaagtaataattacaccacttttta 580  Q
    ||||||||| || ||| ||||||  | | ||| |||||||||||||||||||||||||||||    
T  10008286 aaattttgtcttaaaaatataaacggttacttttgatcaagtaataattacaccacttttta 10008225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 498 - 563
Target Start/End: Original strand, 33607750 - 33607815
Alignment:
Q  498 ggttaagaaattcataaataaaaattttgtgttgaaagtataaatcgattcttctgatcaagtaat 563  Q
    |||||||||||||||||||||||||| |||  | ||| ||||||  | | ||||||||||||||||    
T  33607750 ggttaagaaattcataaataaaaattatgtcattaaaatataaagtgttacttctgatcaagtaat 33607815  T

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