View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_low_10 (Length: 320)
Name: NF2750_low_10
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 1834030 - 1834323
Alignment:
| Q |
12 |
gacatcatcataaaggatgggtagaaaatagggatcacattcaacattgaattaatcaaaacaatcatactctcaattctaatgcatttgtttcccccaa |
111 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1834030 |
gacatcttcataaaggatgagtagaaaatagggatcacattcaacattgaattaatcaaaacaatcatactctcaattctaatgcatttgtttcccccaa |
1834129 |
T |
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| Q |
112 |
gatcctattgcttccaaataacgtccaacattggtgtcatgatgcaaggagtttctcgtaataaatttaaaaccttttccgatggtttgtggagtaattc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1834130 |
gatcctattgcttccaaataacgtccaacattggtgtcatgatgcaaggagtttctcgtaataaatttaaaaccttttccgatggtttgtggagtaattc |
1834229 |
T |
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| Q |
212 |
tcatttctcaccttcaacatgtgaacaatactttgtgtattgtagaggcgactataatccacgggttcttaaagaggttacgagaggctttaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1834230 |
tcatttctcaccttcaacatgtgaacaatactttgtgtattgtagaggcgactataatccacgggttcttaaagaggttacgagaggctttaag |
1834323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 1868473 - 1868766
Alignment:
| Q |
12 |
gacatcatcataaaggatgggtagaaaatagggatcacattcaacattgaattaatcaaaacaatcatactctcaattctaatgcatttgtttcccccaa |
111 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1868473 |
gacatcttcataaaggatgagtagaaaatagggatcacattcaacattgaattaatcaaaacaatcatactctcaattctaatgcatttgtttcccccaa |
1868572 |
T |
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| Q |
112 |
gatcctattgcttccaaataacgtccaacattggtgtcatgatgcaaggagtttctcgtaataaatttaaaaccttttccgatggtttgtggagtaattc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1868573 |
gatcctattgcttccaaataacgtccaacattggtgtcatgatgcaaggagtttctcgtaataaatttaaaaccttttccgatggtttgtggagtaattc |
1868672 |
T |
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| Q |
212 |
tcatttctcaccttcaacatgtgaacaatactttgtgtattgtagaggcgactataatccacgggttcttaaagaggttacgagaggctttaag |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1868673 |
tcatttctcaccttcaacatgtgaacaatactttgtgtattgtagaggcgactataatccacgggttcttaaagaggttacgagaggctttaag |
1868766 |
T |
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