View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_low_13 (Length: 288)
Name: NF2750_low_13
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 3153499 - 3153227
Alignment:
| Q |
1 |
attgatgaaaagtgaaaac---aagcaactacatctaaagaagaactaacgtctacctgctgagctaagcggtgtgatccaattgccattgtgactgaca |
97 |
Q |
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| T |
3153499 |
attgatgaaaaatgaaaacttgaagcaactacatctaaagaagaactaacgtctacctgctgagctaagcggtgtgatccaattgccattgtgactgaca |
3153400 |
T |
|
| Q |
98 |
aaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgtgttgaattggatacatgacaat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3153399 |
aaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgtgttgaattggatacatgacaat |
3153300 |
T |
|
| Q |
198 |
gatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattgaagttaggacctgtttaagg |
270 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3153299 |
gatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattgaagttaggacctgtttaagg |
3153227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 250
Target Start/End: Complemental strand, 44530888 - 44530711
Alignment:
| Q |
73 |
gatccaattgccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcc |
172 |
Q |
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| T |
44530888 |
gatcctatcgccatggtcactgacaaaacggtgggcatggcaattggaattcctccaataagaagcacaaggaggttatcaattccaggacgatagcgtc |
44530789 |
T |
|
| Q |
173 |
tgtgttgaattggatacatgacaatgatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattg |
250 |
Q |
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|||||||| |||||||| |||| | ||| |||| |||||| | |||||| ||||||||||| ||||||||||||| |
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| T |
44530788 |
gatgttgaataggatacataacaacaagctcgacaagcattcccacagcaatcgaacatatgcagaagttcccaattg |
44530711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 250
Target Start/End: Original strand, 1498425 - 1498599
Alignment:
| Q |
76 |
ccaattgccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgt |
175 |
Q |
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||||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| | |||||| | ||||||||||||||| | ||| || | || |
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| T |
1498425 |
ccaatagccatagtgacagacaaaacagttggcattgcaattggaattccaccaatcaaaagcaccaaaagattgtcgattccatctctatacttgcggt |
1498524 |
T |
|
| Q |
176 |
gttgaattggatacatgacaatgatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattg |
250 |
Q |
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| T |
1498525 |
gttgtatcggatacatcactataagctcaaccaatattccaatagcgattgaacaaatgcagaagtttccaattg |
1498599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 230
Target Start/End: Complemental strand, 1460911 - 1460757
Alignment:
| Q |
76 |
ccaattgccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgt |
175 |
Q |
| |
|
||||| ||||| ||||| ||||||||||| ||||| ||||| ||||||||||| || | |||||| | ||||||||||||||| | ||| || | || |
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| T |
1460911 |
ccaatagccatagtgacagacaaaacagttggcattgcaattggaattccacctatcaaaagcaccaaaagattgtcgattccatctctatacttgcggt |
1460812 |
T |
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| Q |
176 |
gttgaattggatacatgacaatgatctcaacaatcattccaatagcaattgaaca |
230 |
Q |
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|||| || |||||||| ||||| ||||||| | ||||||| |||||||||||| |
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| T |
1460811 |
gttgtatcggatacatcacaataatctcaatgagtattccaacagcaattgaaca |
1460757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 76 - 250
Target Start/End: Complemental strand, 15867632 - 15867458
Alignment:
| Q |
76 |
ccaattgccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattccaggacgatatttcctgt |
175 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||| |||||||||||||| || || | ||| || | || ||||||||||| ||||||||| | || |
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| T |
15867632 |
ccaatagccattgtcacagacaaaacagttggcatagcaataggaattcctccgatcaaaaggactaaaaggttgtcgattccttcacgatatttgcggt |
15867533 |
T |
|
| Q |
176 |
gttgaattggatacatgacaatgatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattg |
250 |
Q |
| |
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|||| || ||||||||||| ||||||||| | | ||| |||| ||||| ||||| || |||||||| ||||||| |
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| T |
15867532 |
gttggatcggatacatgactatgatctcagccaacataccaactgcaatggaacaaatacaaaagtttccaattg |
15867458 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 45199037 - 45199126
Alignment:
| Q |
70 |
tgtgatccaattgccattgtgactgacaaaacagtaggcatggcaataggaattccaccaatgagaagcacaagtagattgtcgattcca |
159 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || || ||||| ||||||||||| || |||||||||||||| | ||||||||| |||||| |
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| T |
45199037 |
tgtgaaccaatagccattgtcactgacaacactgttggcattgcaataggaatccctccaatgagaagcaccaatagattgtcaattcca |
45199126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 974013 - 974074
Alignment:
| Q |
70 |
tgtgatccaattgccattgtgactgacaaaacagtaggcatggcaataggaattccaccaat |
131 |
Q |
| |
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||||| ||||| |||||||| ||||| | |||||| ||||| |||||||| ||||||||||| |
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| T |
974013 |
tgtgaaccaatggccattgtaactgaaagaacagttggcattgcaatagggattccaccaat |
974074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 974139 - 974207
Alignment:
| Q |
196 |
atgatctcaacaatcattccaatagcaattgaacatatgcaaaagttcccaattgaagttaggacctgt |
264 |
Q |
| |
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||||| |||| || ||||||||||||||| ||||| ||||| || |||||||| || ||||| |||||| |
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| T |
974139 |
atgatttcaataaccattccaatagcaatcgaacagatgcagaaattcccaatagatgttagaacctgt |
974207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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