View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_low_2 (Length: 550)
Name: NF2750_low_2
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 40057137 - 40056611
Alignment:
| Q |
1 |
tttgggcttgaactgtgctacgtaatgtggtcaataggttgaaaaattactctttacgctttcattttttctccaaatcatctgaaaagaccaaaacacc |
100 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
40057137 |
tttgggcttgaactgtgctacgt-----ggtcaataggttgaaaaattactctttacgctctcattttttctccaaatcatctgaaaagaccaaaacacc |
40057043 |
T |
|
| Q |
101 |
tcaaacgacaannnnnnnn-attaagtcctatacgacagttaactacagccgccgacaaccaacaacagttaactctgttggaaatttttatttcagnnn |
199 |
Q |
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||||| | | | | |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40057042 |
tcaaatggctatttttttttactaagtcctctacgacagttaactacaaacgccgacaaccaacaacagttaactctgttggaaatttttatttcagaaa |
40056943 |
T |
|
| Q |
200 |
nnnnttgcattcacttcctctaagatttatgaaaatgacaccaagatctcctatagttttaaaacttacacttatctccttcgaattctcatgaaataga |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40056942 |
aaa-ttgcattcacttcctctaagatttatgaaaatgacaccaagatctcctatagtttaaaaacttacacttatctccttcgaattctcatgaaataga |
40056844 |
T |
|
| Q |
300 |
caaacacatcccttacttgttaacaccgttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcgtagttattac |
399 |
Q |
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|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
40056843 |
caaacacatcccttacttgttaacaccgttgctttttcgttaattttcacacatattgatccatcttcctcactcatcctttccttgtcgttgttattac |
40056744 |
T |
|
| Q |
400 |
tatcctatcgctcatgtcatggttctcaccatcgttcacattgttgatttgtcgtcttttcacttaaaaatttgcattgcagaacaaagttgtttttaat |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40056743 |
tatcctatcgctcatgtcatggttctcaccatcgttcacattgttgatttgtcgtc-gttcacttaaaaatatgcattgcagaacaaagttgtttttaat |
40056645 |
T |
|
| Q |
500 |
taacgttggaacttggaaacgcatacatggtatt |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
40056644 |
taacgttggaacttggaaacgcatacatggtatt |
40056611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 324
Target Start/End: Complemental strand, 35064477 - 35064378
Alignment:
| Q |
225 |
tttatgaaaatgacaccaagatctcctatagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaaca |
324 |
Q |
| |
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||||| |||||||||| || ||| ||| ||||||||||||| ||||| | ||| | ||||||||| ||||||| ||| || ||||||| ||||||||| |
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| T |
35064477 |
tttattaaaatgacactaacatcccctctagttttaaaactcacactaacttcccttaaattctcatcaaatagataaatacctcccttatttgttaaca |
35064378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 1300052 - 1300096
Alignment:
| Q |
285 |
ttctcatgaaatagacaaacacatcccttacttgttaacaccgtt |
329 |
Q |
| |
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|||| ||||||||||||||||| |||||| ||| ||||||||||| |
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|
| T |
1300052 |
ttctaatgaaatagacaaacacctcccttccttattaacaccgtt |
1300096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 280
Target Start/End: Original strand, 41714118 - 41714166
Alignment:
| Q |
232 |
aaatgacaccaagatctcctatagttttaaaacttacacttatctcctt |
280 |
Q |
| |
|
|||||||||||| ||||||| || |||||||||||||||| | |||||| |
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| T |
41714118 |
aaatgacaccaacatctcctctaattttaaaacttacactaacctcctt |
41714166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 3e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 228 - 532
Target Start/End: Original strand, 39484360 - 39484664
Alignment:
| Q |
228 |
atgaaaatgacaccaagatctcctatagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccg |
327 |
Q |
| |
|
|||||||||||||||| ||| || || |||||||||||||||||| |||| || | ||||||||||||| | |||||||||||||| || ||||||||| |
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| T |
39484360 |
atgaaaatgacaccaatatccccactaattttaaaacttacacttacctccctcaagttctcatgaaatatataaacacatcccttatttattaacaccg |
39484459 |
T |
|
| Q |
328 |
ttgcttttccgttaattttcacacatattgatccatcttcttcactcatcatttccttgtcgtagttattactatcctatcgctcatgtcatggttctca |
427 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||||||||| | ||| || |||||| ||| | ||||||||||| |||||||||||||||||| ||||| |
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| T |
39484460 |
ttacttttccgttaattttcacagatattgatccatcttcctatctcgtc-tttcctcgtcattgttattactatgctatcgctcatgtcatggctctca |
39484558 |
T |
|
| Q |
428 |
ccatcgttcacattgttgat-ttgtcgtcttttcacttaaaaatttgcattgcagaacaaagttgtttttaattaac-gttggaacttggaaacgcatac |
525 |
Q |
| |
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||||| |||||||||||||| | || ||| ||||||||| ||| ||||||| || |||||||||||| ||| ||| ||||||| ||||||||||| || |
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| T |
39484559 |
ccatcattcacattgttgatctcgttgtc-cttcacttaagaatatgcattgaaggacaaagttgtttctaacgaacagttggaatttggaaacgcacac |
39484657 |
T |
|
| Q |
526 |
atggtat |
532 |
Q |
| |
|
||||||| |
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| T |
39484658 |
atggtat |
39484664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 344
Target Start/End: Original strand, 50071335 - 50071391
Alignment:
| Q |
288 |
tcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaatt |
344 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| ||||||||||| ||||| ||||||| |
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|
| T |
50071335 |
tcatcaaatacacaaacacttcccttacttattaacaccgttagttttcagttaatt |
50071391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 253 - 499
Target Start/End: Original strand, 35145621 - 35145866
Alignment:
| Q |
253 |
tagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgttaattttcacaca |
352 |
Q |
| |
|
||||||||||||||||||| | |||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
35145621 |
tagttttaaaacttacactaacctccctcgagttctcataaaatagacaaacacatcccttacttgttaacacagttacttttccgttaattttcacaca |
35145720 |
T |
|
| Q |
353 |
tattgatccatcttcttcactcatcatttccttgtcgtagttattactatcctatcgctcatgtcatggttctcaccatcgttcacattgttgat-ttgt |
451 |
Q |
| |
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||||||| ||||||| |||||| || || | | ||| || ||||| | | |||||||||||||| | ||||||| || | ||||| |||||| | | |
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| T |
35145721 |
tattgattcatcttcctcactcgtc-cctcatcgacgttgtcgttactctgccatcgctcatgtcattgatctcaccctcctacacatcgttgatctctt |
35145819 |
T |
|
| Q |
452 |
cgtcttttcacttaaaaatttgcattgcagaacaaagttgtttttaat |
499 |
Q |
| |
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| || ||| |||||||||| ||||||| || ||||||||||||||||| |
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| T |
35145820 |
catccttt-acttaaaaatatgcattgaaggacaaagttgtttttaat |
35145866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 253 - 341
Target Start/End: Complemental strand, 25476116 - 25476028
Alignment:
| Q |
253 |
tagttttaaaacttacacttatctccttcgaattctcatgaaatagacaaacacatcccttacttgttaacaccgttgcttttccgtta |
341 |
Q |
| |
|
|||||||||||||||||| | |||| || | || | |||||||| |||||||| ||||||| | ||||||||||| |||||||||| |
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|
| T |
25476116 |
tagttttaaaacttacacgaacctccctcaagtttttatgaaataaacaaacacctcccttatctattaacaccgttaattttccgtta |
25476028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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