View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_low_3 (Length: 532)
Name: NF2750_low_3
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 13 - 513
Target Start/End: Complemental strand, 37116846 - 37116344
Alignment:
| Q |
13 |
aatatgtcaatgaatgctaattgaacctggaactagatttgattcatcagtcccagcaatacagtgaggggggtaaggttcctctggcttgttaggttgg |
112 |
Q |
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| T |
37116846 |
aatatgtcaatgaatgctaattgaacctggaactagatttgattcatcagtcccagcaatacagtgaggggggtaaggttcctctggcttgttaggttgg |
37116747 |
T |
|
| Q |
113 |
tgagaatcaaggaaaaccataattggcaatttcttctcacagaatagtctagctagccttgctgattcattgatcatttctgaaatttgtctattggact |
212 |
Q |
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| T |
37116746 |
tgagaatcaaggaaaaccataattggcaatttcttctcacagaatagtctagctagccttgctgattcattgatcatttctgaaatttgtctattggact |
37116647 |
T |
|
| Q |
213 |
ctcttggtgcctgaaaaaatataaatagcattcatcccttatatcttgaatttcatccacttcaaagtgtgtaagcatcaaatttataaagactaaccct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37116646 |
ctcttggtgcctgaaaaaatataaatagcattcatcccttatgtcttgaatttcatccacttc-aagtgtgtaagcatcaaatttataaagactaaccct |
37116548 |
T |
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| Q |
313 |
ttagtgaatgaagaaggaaaaatataatttaaaaggagtaagcaaa---aacaccatactactatagtttatgatgaaaatttgacaaaagaatattcaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37116547 |
ttagtgaatgaagaaggaaaaatataatttaaaaggagtaagcaaaaacaacaccatactactatagtttatgatgaaaatttcacaaaagaatattcaa |
37116448 |
T |
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| Q |
410 |
aaattaaaaacaagtgtatagatcttctacaactgtttgcacggtgcagtggcatgtaagactattagatcaggttcagatccgttggttttacatgcac |
509 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37116447 |
aaattaaaaacaagtgtatagatcttctacaactgtttgcacggtgcagtggcatgtaagactattagatcaggttcagatccgttggttttacatgcac |
37116348 |
T |
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| Q |
510 |
ctgc |
513 |
Q |
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|||| |
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| T |
37116347 |
ctgc |
37116344 |
T |
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