View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_low_4 (Length: 532)
Name: NF2750_low_4
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 245 - 514
Target Start/End: Original strand, 2154327 - 2154593
Alignment:
| Q |
245 |
tagtatatcaaatagtttgtgttattttaacttgttatnnnnnnnnnnnttgttgaaaacatctgaaccaatgaatgtgattgctttctgagttttacaa |
344 |
Q |
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| T |
2154327 |
tagtatatcaaatagtttgtgttattttaacttgttaaaaaaaaaaa---tgttgaaaacatctgaaccaatgaatgtgattgctttctgagttttacaa |
2154423 |
T |
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| Q |
345 |
ggggcccagaaaatgatatttttatgttaccataaaaaatttaatgacttcttaggagcaacctgtcttctccaatattggaagcattaaagagcaattc |
444 |
Q |
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| T |
2154424 |
gggccccagaaaatgatatttttatgttaccataaaaaatttaatgacttcttaggagcaacctgtcttctccaatattggaagcattaaagagcaattc |
2154523 |
T |
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| Q |
445 |
ctaaccctatattttatgttaaagttactcacatgtatttttaccaaatagttgattcaaatcaccaaat |
514 |
Q |
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| T |
2154524 |
ctaaccctatattttatgttaaagttactcacatgtatttttaccaaatagttgattcaaatcaccaaat |
2154593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 2154131 - 2154331
Alignment:
| Q |
11 |
cagagaggtggggtttggtattccactaaggacgtaacttgaatgaataaatgtcgacacnnnnnnnntctatagtatcaataagtgcatcacacaaaaa |
110 |
Q |
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| T |
2154131 |
cagagaggtggggtttggtattccactaaggacgtaacttgaatgaataaatgtcgacacaaaaaaa-tctatagtatcaataagtgcatcacacaaaaa |
2154229 |
T |
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| Q |
111 |
caaatatcaccgcaaatgaaaatgactatattctttacatttatctgag--aaataaaattaaaacaattaaagtatgaaaatttgtttgaaaaagctag |
208 |
Q |
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| T |
2154230 |
caaatatcaccgcaaatgaaaatgactatattctttacatttatctgagaaaaaaaaaattaaaacaattaaagtatgaaaatttgtttgaaaaagctag |
2154329 |
T |
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| Q |
209 |
ta |
210 |
Q |
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| T |
2154330 |
ta |
2154331 |
T |
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