View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2750_low_9 (Length: 345)
Name: NF2750_low_9
Description: NF2750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2750_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 41138690 - 41138379
Alignment:
| Q |
20 |
ctgataggaagagttaagatcctcttgatttgataaacggagataatcatagc-ctaatagaaaaagttaggattgataatatttaaaaacaccaaaggg |
118 |
Q |
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| T |
41138690 |
ctgatagaaagagttaagatcctcttgatttgataaacggagataatcatagcactaatagaaaaagttaggattgataatatttaaaaacaccaaaggg |
41138591 |
T |
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| Q |
119 |
tatttaggtattttgaaaagggcaagctagggacattagatggggacctcttattatatcaatagttaaaaaa-gaaagaataaagcaataataattccc |
217 |
Q |
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| T |
41138590 |
tatttaggtattttgaaaagggcaagctagggacattagatggggacctcttattatatcaatagttaaaaaaagaaagaataaagcaataataattccc |
41138491 |
T |
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| Q |
218 |
tctccaactcttatttaaaaccttcaatccaacacctcattgaagccaagaaactaagtgctcatatatacaataatttctatctagcatccacattaca |
317 |
Q |
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| T |
41138490 |
cctccaactcttatttaaaaccttcaatccaacacctcattgaagccaagaaactaagtgctcatatatacaataatttctatctagcatccacattaca |
41138391 |
T |
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| Q |
318 |
acaaccaacaac |
329 |
Q |
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| T |
41138390 |
acaaccaacaac |
41138379 |
T |
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