View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2751_high_4 (Length: 538)

Name: NF2751_high_4
Description: NF2751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2751_high_4
NF2751_high_4
[»] chr1 (4 HSPs)
chr1 (6-520)||(9798251-9798766)
chr1 (227-386)||(49642439-49642598)
chr1 (436-518)||(49642865-49642947)
chr1 (29-113)||(6755046-6755130)
[»] chr8 (3 HSPs)
chr8 (227-386)||(15191684-15191843)
chr8 (436-518)||(15191335-15191417)
chr8 (41-117)||(15191944-15192020)
[»] scaffold0164 (5 HSPs)
scaffold0164 (227-312)||(18131-18216)
scaffold0164 (227-386)||(28511-28670)
scaffold0164 (436-518)||(18557-18639)
scaffold0164 (436-518)||(28937-29019)
scaffold0164 (41-117)||(17954-18030)
[»] chr3 (6 HSPs)
chr3 (227-386)||(53976702-53976861)
chr3 (436-518)||(53976353-53976435)
chr3 (239-312)||(31196533-31196606)
chr3 (239-312)||(52771707-52771780)
chr3 (436-500)||(31196947-31197011)
chr3 (436-500)||(52771302-52771366)
[»] chr7 (2 HSPs)
chr7 (239-312)||(16255197-16255270)
chr7 (436-500)||(16254792-16254856)
[»] chr6 (3 HSPs)
chr6 (239-312)||(26132117-26132190)
chr6 (436-500)||(26129512-26129576)
chr6 (437-500)||(29155505-29155568)
[»] chr4 (4 HSPs)
chr4 (227-386)||(18252532-18252691)
chr4 (239-312)||(13986667-13986740)
chr4 (436-500)||(13986262-13986326)
chr4 (440-503)||(20245905-20245968)
[»] scaffold0014 (2 HSPs)
scaffold0014 (239-312)||(97177-97250)
scaffold0014 (436-500)||(97591-97655)
[»] scaffold0013 (2 HSPs)
scaffold0013 (239-312)||(250294-250367)
scaffold0013 (436-500)||(250708-250772)
[»] chr2 (4 HSPs)
chr2 (446-501)||(31187162-31187217)
chr2 (446-501)||(31195222-31195277)
chr2 (446-501)||(31213837-31213892)
chr2 (436-512)||(20044630-20044706)
[»] scaffold0061 (2 HSPs)
scaffold0061 (436-482)||(13861-13907)
scaffold0061 (436-482)||(22919-22965)


Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 6 - 520
Target Start/End: Original strand, 9798251 - 9798766
Alignment:
Q  6 tctcaagggaagagtgactttccatagcagaattctttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctacc 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798251 tctcaagggaagagtgacttgccatagcagaattctttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctacc 9798350  T
Q  106 acataaagaacaggtatgcgtctgatttgaggggaatgaaggaccattgccacgtcccctaccttgtgatctcccataagaagcagcatttatgagaatt 205  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9798351 acaaaaagaacaggtatgcgtctgatttgaggggaatgaaggaccattgccacgtcccctaccttgtgatttcccataagaagcagcatttatgagaatt 9798450  T
Q  206 tcggactcataaactggtgtagaaatcttgaactgtctctcatgttgcaaaaccatggaaaaga-tcttgttgagagtgggtaaagggttcatcaacaaa 304  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  9798451 ttggactcataaactggtgtagaaatcttgaactgtctctcatgttgcaaaaccatggaaaaaaatcttgttgagagtgggtaaagggttcatcaacaaa 9798550  T
Q  305 atttgagatctaagcatgtcaaaggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttagaattactcaaaccagtaa 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9798551 atttgagatctaagcatgtcaaaggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttagaattactcaaaccagtaa 9798650  T
Q  405 cacaaacacaacggtgagggcatgttgcaccgaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactct 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9798651 cacaaacacaacggtgagggcatgttgcaccgaattcatgatccacgaatgaataagcatgttgcactgattccaagccttaaaacttggatcaaactct 9798750  T
Q  505 gttggaacagggatta 520  Q
    ||||||||||||||||    
T  9798751 gttggaacagggatta 9798766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 386
Target Start/End: Original strand, 49642439 - 49642598
Alignment:
Q  227 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 326  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  49642439 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaatagaatctgagaacgaaccaaatcaa 49642538  T
Q  327 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 386  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  49642539 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 49642598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 49642865 - 49642947
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 518  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  49642865 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggat 49642947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 6755046 - 6755130
Alignment:
Q  29 atagcagaattctttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaag 113  Q
    |||||||  ||||| ||||||| |||| |||||| ||||||| |||||||  ||||||| || || |||||||||||||| ||||    
T  6755046 atagcaggtttcttaccaaaatgtggaggaaaaccatgtttcttataacagctttcaattgtgtggccatttctaccacaaaaag 6755130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 386
Target Start/End: Complemental strand, 15191843 - 15191684
Alignment:
Q  227 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 326  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| ||||| | || ||  ||||    
T  15191843 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaataaaatctgagaacgaaccagatcaa 15191744  T
Q  327 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 386  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  15191743 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 15191684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 436 - 518
Target Start/End: Complemental strand, 15191417 - 15191335
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 518  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| |||||||||||||||||    
T  15191417 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatctgttggaacagggat 15191335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Complemental strand, 15192020 - 15191944
Alignment:
Q  41 tttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaagaaca 117  Q
    |||||| |||||||| |||||| |||||||||||||||  | |||||||| || |||| ||| ||||| ||||||||    
T  15192020 tttccataatttggaggaaaaccatgtttcctataacatatatcaatggtgtggccatctctgccacagaaagaaca 15191944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 312
Target Start/End: Original strand, 18131 - 18216
Alignment:
Q  227 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| ||||| |||||    
T  18131 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaataaaatctgaga 18216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 386
Target Start/End: Original strand, 28511 - 28670
Alignment:
Q  227 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 326  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  28511 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaatagaatctgagaacgaaccagatcaa 28610  T
Q  327 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 386  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  28611 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 28670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 18557 - 18639
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 518  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  18557 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatcagttggaacagggat 18639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 436 - 518
Target Start/End: Original strand, 28937 - 29019
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 518  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||  |||||||||| || ||||||||||||||    
T  28937 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaagtttggatcaaaatccgttggaacagggat 29019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 117
Target Start/End: Original strand, 17954 - 18030
Alignment:
Q  41 tttccaaaatttggatgaaaacaatgtttcctataacaagtttcaatggtatgcccatttctaccacataaagaaca 117  Q
    |||||| |||||||| |||||| |||||||||||||||  | |||||||| || |||| ||| ||||| ||||||||    
T  17954 tttccataatttggaggaaaaccatgtttcctataacatatatcaatggtgtggccatctctgccacagaaagaaca 18030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 227 - 386
Target Start/End: Complemental strand, 53976861 - 53976702
Alignment:
Q  227 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 326  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||| ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  53976861 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattgatagttggtaaaggattcatcaatagaatctgagaacgaaccaaatcaa 53976762  T
Q  327 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 386  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  53976761 aagaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 53976702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 436 - 518
Target Start/End: Complemental strand, 53976435 - 53976353
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaacagggat 518  Q
    |||||||| ||||| ||||| | |||||||||||| |||||||||||||| ||| |||||||||| || ||||||||||||||    
T  53976435 gaattcataatccaagaatgcacaagcatgttgcaacgattccaagccttgaaatttggatcaaaatccgttggaacagggat 53976353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 31196533 - 31196606
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  31196533 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 31196606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 52771780 - 52771707
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  52771780 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 52771707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 31196947 - 31197011
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  31196947 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 31197011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 52771366 - 52771302
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  52771366 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 52771302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 16255270 - 16255197
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  16255270 tgtctttcatgctgcaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 16255197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 16254856 - 16254792
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | ||||||||| || |||||||| || || ||||||||||||||    
T  16254856 gaattcatgatccatgaatgcacaagcatgttacaacgattccatgctttgaaacttggatcaaa 16254792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 26132190 - 26132117
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| ||||| ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  26132190 tgtctttcatgctgcaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 26132117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 26129576 - 26129512
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | ||||||||| || |||||||| || || ||||||||||||||    
T  26129576 gaattcatgatccatgaatgcacaagcatgttacaacgattccatgctttgaaacttggatcaaa 26129512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 29155505 - 29155568
Alignment:
Q  437 aattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    ||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||| ||||||||    
T  29155505 aattcatgatccaagaatgcacaagcatgttgcaacgatttcacgccttgaaactaggatcaaa 29155568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 227 - 386
Target Start/End: Complemental strand, 18252691 - 18252532
Alignment:
Q  227 gaaatcttgaactgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgagatctaagcatgtcaa 326  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| || | ||| |||||||| |||||||| | ||| ||||| | || ||  ||||    
T  18252691 gaaatcttgaactgtctctcatgttgcataaccatagaaaaaatcttattcatagttggtaaaggattcatcaatagaatctgagaacgaaccaaatcaa 18252592  T
Q  327 aggaatcatttaaaccggttaagaacctaattgaacgtgtaatttcatgttggtgtttag 386  Q
    | |||||||| || || || |  || | ||| |||||||| || |||||||| |||||||    
T  18252591 acgaatcattcaatccagtaagaaaacgaatagaacgtgtgatctcatgttgatgtttag 18252532  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Complemental strand, 13986740 - 13986667
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  13986740 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 13986667  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Complemental strand, 13986326 - 13986262
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  13986326 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 13986262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 503
Target Start/End: Original strand, 20245905 - 20245968
Alignment:
Q  440 tcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactc 503  Q
    |||| ||||| ||||| ||||||||||||||  ||||||||||||| |||| ||||||||||||    
T  20245905 tcataatccaagaatgcataagcatgttgcaatgattccaagccttgaaacatggatcaaactc 20245968  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 97177 - 97250
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| || || ||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||    
T  97177 tgtctttcatgctgtaataccattgaaaaaatcttgttgagagttggtaaagggttcatcaacaagatttgaga 97250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 97591 - 97655
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  97591 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 97655  T

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Target: scaffold0013 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 250294 - 250367
Alignment:
Q  239 tgtctctcatgttgcaaaaccatggaaaagatcttgttgagagtgggtaaagggttcatcaacaaaatttgaga 312  Q
    ||||| ||||| || || ||||| ||||| || ||||||||||| |||||||||||||||||||| ||||||||    
T  250294 tgtctttcatgctgaaataccattgaaaaaatattgttgagagttggtaaagggttcatcaacaagatttgaga 250367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 500
Target Start/End: Original strand, 250708 - 250772
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaa 500  Q
    |||||||||||||| ||||| | |||||||||||| |||||||| || || ||||||||||||||    
T  250708 gaattcatgatccatgaatgtacaagcatgttgcaacgattccatgctttgaaacttggatcaaa 250772  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 31187217 - 31187162
Alignment:
Q  446 tccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaac 501  Q
    ||||| |||||| |||||| ||||| |||||||||| ||| |||||||||||||||    
T  31187217 tccacaaatgaacaagcatattgcagcgattccaagacttgaaacttggatcaaac 31187162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 31195277 - 31195222
Alignment:
Q  446 tccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaac 501  Q
    ||||| |||||| |||||| ||||| |||||||||| ||| |||||||||||||||    
T  31195277 tccacaaatgaacaagcatattgcagcgattccaagacttgaaacttggatcaaac 31195222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 446 - 501
Target Start/End: Complemental strand, 31213892 - 31213837
Alignment:
Q  446 tccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaac 501  Q
    ||||| |||||| |||||| ||||| |||||||||| ||| |||||||||||||||    
T  31213892 tccacaaatgaacaagcatattgcagcgattccaagacttgaaacttggatcaaac 31213837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 436 - 512
Target Start/End: Original strand, 20044630 - 20044706
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagccttaaaacttggatcaaactctgttggaac 512  Q
    |||||||||||||| || || || | ||||||||| || ||||| ||||| ||||| ||||||||||| || |||||    
T  20044630 gaattcatgatccaggagtggattaacatgttgcaacggttccacgccttgaaactaggatcaaactccgtgggaac 20044706  T

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Target: scaffold0061 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 13861 - 13907
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagc 482  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||||    
T  13861 gaattcaagatccatgagtgaatcagcatgttgcaccgattccaagc 13907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 22919 - 22965
Alignment:
Q  436 gaattcatgatccacgaatgaataagcatgttgcaccgattccaagc 482  Q
    ||||||| |||||| || ||||| |||||||||||||||||||||||    
T  22919 gaattcaagatccatgagtgaatcagcatgttgcaccgattccaagc 22965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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