View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2751_low_1 (Length: 815)

Name: NF2751_low_1
Description: NF2751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2751_low_1
NF2751_low_1
[»] chr3 (10 HSPs)
chr3 (299-798)||(35477746-35478265)
chr3 (79-240)||(35477522-35477683)
chr3 (16-81)||(35477410-35477475)
chr3 (290-365)||(50724373-50724449)
chr3 (290-365)||(50788399-50788475)
chr3 (296-365)||(53467960-53468030)
chr3 (290-365)||(43566809-43566886)
chr3 (290-328)||(13874885-13874923)
chr3 (292-363)||(23820636-23820709)
chr3 (290-365)||(33206762-33206839)
[»] chr1 (5 HSPs)
chr1 (679-765)||(30870587-30870674)
chr1 (290-365)||(4354118-4354195)
chr1 (290-365)||(49251408-49251485)
chr1 (290-335)||(20357465-20357511)
chr1 (290-335)||(20562444-20562490)
[»] chr4 (6 HSPs)
chr4 (687-770)||(11392819-11392903)
chr4 (687-770)||(11402546-11402630)
chr4 (671-769)||(2436199-2436298)
chr4 (291-352)||(26708578-26708641)
chr4 (290-363)||(29269330-29269404)
chr4 (290-365)||(3465588-3465665)
[»] chr5 (6 HSPs)
chr5 (292-364)||(29144149-29144223)
chr5 (290-365)||(22599949-22600025)
chr5 (290-365)||(33800898-33800975)
chr5 (290-359)||(29050805-29050876)
chr5 (292-365)||(33729785-33729860)
chr5 (305-365)||(27025442-27025503)
[»] chr8 (2 HSPs)
chr8 (305-388)||(2376539-2376624)
chr8 (290-365)||(43874990-43875067)
[»] chr7 (5 HSPs)
chr7 (291-365)||(35368402-35368478)
chr7 (290-361)||(5748950-5749021)
chr7 (290-365)||(27047728-27047805)
chr7 (305-388)||(23685547-23685628)
chr7 (290-328)||(31694076-31694114)
[»] chr2 (6 HSPs)
chr2 (290-365)||(10262744-10262821)
chr2 (290-328)||(42091325-42091364)
chr2 (290-365)||(3179329-3179406)
chr2 (290-365)||(22297465-22297542)
chr2 (290-365)||(30474208-30474285)
chr2 (295-364)||(38530208-38530280)
[»] chr6 (1 HSPs)
chr6 (290-328)||(34792895-34792933)
[»] scaffold0006 (1 HSPs)
scaffold0006 (290-338)||(159019-159068)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-169; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 299 - 798
Target Start/End: Original strand, 35477746 - 35478265
Alignment:
Q  299 gttggtggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattcacc-------gtgaattctagccattaggctactt 390  Q
    ||||||||||| |||||||||||||| |||||  || ||| ||||| | ||||||||| |||||||||       ||||||||||| ||||||||||| |    
T  35477746 gttggtggacattgcattattatatttaggtgtcggagttcgaactccggacaccccacttattcaccttataaggtgaattctagtcattaggctacct 35477845  T
Q  391 a----------tcaacaaacacgtttaagtttcatcgannnnnnnaggagatgaagaattattattacttaggaacaatgaatagaagaagaaaatataa 480  Q
    |          |||||||||||||||||||||||| ||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35477846 aacaaaaaaaatcaacaaacacgtttaagtttcatagatttttttaggagatgaagaattattattacttaggaacaatgaatagaagaagaaaatataa 35477945  T
Q  481 tgctcattgacttttcatataaaaaatctttattgactttgaaaagaaaaattagaagagtcaaaagtggttattacttggtactattagatgctttcat 580  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35477946 tgctcattgacttttcatataaaaaatctttattgactttgaaaagaaaaattagaagagtcaaaagtggttattacttggtactattagatgctttcat 35478045  T
Q  581 ttaaatcaaatcgggaacttccaacactttagg-----aaaaaatggttannnnnnngtttagaatagcaagcgatagagttgtttcacttatcgtgtcc 675  Q
    |||||||||||||||||||||||||||||||||     |||||||||| |       |||||||||||| | |||||||   |||||| ||||||||||     
T  35478046 ttaaatcaaatcgggaacttccaacactttaggaaagtaaaaaatggtaatttttttgtttagaatagcgaacgataga---gtttcatttatcgtgtct 35478142  T
Q  676 caaggcatgtttaacgtgaaaatgaagaagtatattttgtagctttagagaaaacacacattaagcttgcattcaccgcaaaaacaaacaagagcctatg 775  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  35478143 caaggcatgtttaacgtgaaaatgaagaagtatactttgtagctttagagaaaacacacgttaagtttgcattcaccgcaaaaacaaacaagagcctatg 35478242  T
Q  776 tttcttatatgatggtatctact 798  Q
    |||||||||||||||||||||||    
T  35478243 tttcttatatgatggtatctact 35478265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 35477522 - 35477683
Alignment:
Q  79 tacctgatagaaattcattaatgaacatgtggacttgtttctttggagcatacactaacaacaagatgtgcaagtaataaaagttatgtcgatcatttaa 178  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  35477522 tacctgatagaaattcattaatgaacatgtggacttgttcctttggagcatacactaacaacaagatgtgtaagtaataaaagctatgtcgatcatttaa 35477621  T
Q  179 tcacactgactattcttacggttcatcatcaactacatgggtcgcaacttcatatattaaga 240  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35477622 tcacaccgactattcttacggttcatcatcaactacatgggtcgcaacttcatatattaaga 35477683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 35477410 - 35477475
Alignment:
Q  16 aatatatcacaaacaagatgttatagtnnnnnnngttatgtagagagcgatttcgtaatcgaatac 81  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  35477410 aatatatcacaaacaagatgttatagtaaaaaaagttatgtagagagcgatttcgtaatcgaatac 35477475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 50724373 - 50724449
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||| ||||||||||||||||||||||||||||| |||| | | ||||| |||| || ||||||||| |||||||||    
T  50724373 catagctcagttggtggacaatgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcacc 50724449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 50788475 - 50788399
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||| ||||||||||||||||||||||||||||| |||| | | ||||| |||| || ||||||||| |||||||||    
T  50788475 catagctcagttggtggacaatgcattattatatgcaggggttggggttcgaacctcggacaccccacttattcacc 50788399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 296 - 365
Target Start/End: Original strand, 53467960 - 53468030
Alignment:
Q  296 tcagttggt-ggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||| ||||||||||||||||||| |||| || ||||| |||| || ||||||||| |||||||||    
T  53467960 tcagttggtaggacaatgcattattatatgcaggggcggggttcgaacctcggacaccccacttattcacc 53468030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 43566886 - 43566809
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| | | ||||| |||| |||||||||||| |||||||||    
T  43566886 catagctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcagacaccccacttattcacc 43566809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 13874923 - 13874885
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcagg 328  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  13874923 catagctcagttggtggacaatgcattattatatgcagg 13874885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 23820636 - 23820709
Alignment:
Q  292 taactcagttggt-ggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattca 363  Q
    ||||||||||||| ||||||||||||||||||| |||| || || ||| ||||  ||||||||||| |||||||    
T  23820636 taactcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccagacaccccacttattca 23820709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 33206762 - 33206839
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgct-gggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| ||| ||||| ||||  | ||||||||| |||||||||    
T  33206762 catagctcagttggtaggacaatgcattattatatgcaggggctggggttcgaaccccggacaccccacttattcacc 33206839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 679 - 765
Target Start/End: Original strand, 30870587 - 30870674
Alignment:
Q  679 ggcatgtttaacgtgaaaatgaagaag-tatattttgtagctttagagaaaacacacattaagcttgcattcaccgcaaaaacaaaca 765  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||    
T  30870587 ggcatatttaacgtgaaaatgaagaagctatattttgtagctttagagaaaacgcacgttaagcttgtattcaccgcaaaaacaaaca 30870674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 4354195 - 4354118
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| | | ||||| ||||||| ||||||||| |||||||||    
T  4354195 catagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacttcggacaccccacttattcacc 4354118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 49251485 - 49251408
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||    
T  49251485 cataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcacc 49251408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 335
Target Start/End: Original strand, 20357465 - 20357511
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctggg 335  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  20357465 cataactcagttggtaggacaatgcattattatatgcaggggctggg 20357511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 20562490 - 20562444
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctggg 335  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  20562490 cataactcagttggtaggacaatgcattattatatgcaggggctggg 20562444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 687 - 770
Target Start/End: Original strand, 11392819 - 11392903
Alignment:
Q  687 taacgtgaaaatgaagaag-tatattttgtagctttagagaaaacacacattaagcttgcattcaccgcaaaaacaaacaagagc 770  Q
    ||||||||||||||||||| || |||||||||||||| ||||||   || |||||||||||||||||||||||||||||||||||    
T  11392819 taacgtgaaaatgaagaagctacattttgtagctttacagaaaatgtacgttaagcttgcattcaccgcaaaaacaaacaagagc 11392903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 687 - 770
Target Start/End: Original strand, 11402546 - 11402630
Alignment:
Q  687 taacgtgaaaatgaagaag-tatattttgtagctttagagaaaacacacattaagcttgcattcaccgcaaaaacaaacaagagc 770  Q
    ||||||||||||||||||| || |||||||||||||| ||||||   || |||||||||||||||||||||||||||||||||||    
T  11402546 taacgtgaaaatgaagaagctacattttgtagctttacagaaaatgtacgttaagcttgcattcaccgcaaaaacaaacaagagc 11402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 671 - 769
Target Start/End: Complemental strand, 2436298 - 2436199
Alignment:
Q  671 tgtcccaaggcatgtttaacgtgaaaatgaagaag-tatattttgtagctttagagaaaacacacattaagcttgcattcaccgcaaaaacaaacaagag 769  Q
    |||||| | |||| |||||| |||||||  ||||| || ||||||||| |||||||||||||||| ||||  ||| ||||||||||||| ||||||||||    
T  2436298 tgtcccgaagcatatttaacttgaaaatatagaagctacattttgtaggtttagagaaaacacacgttaatgttgtattcaccgcaaaagcaaacaagag 2436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 291 - 352
Target Start/End: Complemental strand, 26708641 - 26708578
Alignment:
Q  291 ataactcagttggt--ggacaatgcattattatattcaggtgctgggtttgaacttcagacacc 352  Q
    ||||||||||||||  ||||||||||||||||||| |||| | |||||| |||| |||||||||    
T  26708641 ataactcagttggtagggacaatgcattattatatgcaggggttgggttcgaacctcagacacc 26708578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 363
Target Start/End: Complemental strand, 29269404 - 29269330
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgctggg-tttgaacttcagacaccccatttattca 363  Q
    |||| |||||||||||||||||||||||||||||  ||| |||||| || ||||  | ||||||||| |||||||    
T  29269404 catagctcagttggtggacaatgcattattatatgtaggggctgggattcgaaccccggacaccccacttattca 29269330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 3465588 - 3465665
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgg-gtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| || || ||| ||||  | ||||||||| |||||||||    
T  3465588 cataactcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacaccccacttattcacc 3465665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 292 - 364
Target Start/End: Original strand, 29144149 - 29144223
Alignment:
Q  292 taactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcac 364  Q
    ||||||||||||| ||||||||||||||||||| |||| | | ||||||||||| ||||||||||||||||||||    
T  29144149 taactcagttggtaggacaatgcattattatatgcaggggtcggggtttgaactccagacaccccatttattcac 29144223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 22600025 - 22599949
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctggg-tttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | |||| |||||||  ||||||||||| |||||||||    
T  22600025 cataactcagttggtaggacaatgcattattatatgcagg-gttgggatttgaaccccagacaccccacttattcacc 22599949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 33800898 - 33800975
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||    
T  33800898 cataactcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcacc 33800975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 29050805 - 29050876
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccattta 359  Q
    |||| |||||||||| ||||||||||||||||||| |||| | | ||||||||||| | |||||||||||||    
T  29050805 catagctcagttggtaggacaatgcattattatatgcaggggccggggtttgaactccggacaccccattta 29050876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 33729785 - 33729860
Alignment:
Q  292 taactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||| ||||||||||||||||||| |||| | | ||||| |||  |||||||||||| |||||||||    
T  33729785 taactcagttggtaggacaatgcattattatatgcaggggccggggttcgaatctcagacaccccacttattcacc 33729860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 305 - 365
Target Start/End: Complemental strand, 27025503 - 27025442
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||||| ||||||||||| | ||||||| ||||  ||||||||||| |||||||||    
T  27025503 ggacaatgcattgttatattcaggggcctgggttcgaaccccagacaccccacttattcacc 27025442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 305 - 388
Target Start/End: Original strand, 2376539 - 2376624
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc-gtgaattctagccattaggctac 388  Q
    ||||||||||||||||||| |||| | | ||||| |||| || ||||| ||| ||||||||| |||||||||||||||||||||||    
T  2376539 ggacaatgcattattatatgcaggggtccgggttcgaacctcggacactccacttattcacctgtgaattctagccattaggctac 2376624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 43875067 - 43874990
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||| | |||||||||||||||||||  ||| |||| |||| ||||  ||||||||||| |||||||||    
T  43875067 cataactcagttgataggacaatgcattattatatgtaggggctgaggttcgaacaccagacaccccacttattcacc 43874990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 35368402 - 35368478
Alignment:
Q  291 ataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    |||||||||||||| ||||| |||||||||||||| ||| |||| |||| ||||| | |||||||||||||||||||    
T  35368402 ataactcagttggtaggacattgcattattatatttaggggctgtggttcgaactccggacaccccatttattcacc 35368478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 5749021 - 5748950
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcaggtgctgggtttgaacttcagacaccccatttatt 361  Q
    |||| ||||||||||||| ||||||||||||||| |||| |||||||| |||| || |||| |||| |||||    
T  5749021 catagctcagttggtggataatgcattattatatacaggggctgggttcgaacctcggacatcccacttatt 5748950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 27047805 - 27047728
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgggttt-gaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| || ||| || |||| || |||||||||||||||||||    
T  27047805 catagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccatttattcacc 27047728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 305 - 388
Target Start/End: Complemental strand, 23685628 - 23685547
Alignment:
Q  305 ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcaccgtgaattctagccattaggctac 388  Q
    ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||   ||||||||||| ||||||||    
T  23685628 ggacaatgcattattatatgcaggggccggggttcgaaccccagacaccccacttattcacc---aattctagccactaggctac 23685547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 31694076 - 31694114
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcagg 328  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  31694076 catagctcagttggtggacaatgcattattatatgcagg 31694114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 10262744 - 10262821
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtg-ctgggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| ||||||||||||||||||| |||| | | ||||| ||||  ||||||||||| |||||||||    
T  10262744 cataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcacc 10262821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 42091364 - 42091325
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcagg 328  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  42091364 cataactcagttggtaggacaatgcattattatattcagg 42091325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 3179329 - 3179406
Alignment:
Q  290 cataactcagttggtgga-caatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    ||||||||||||||| || |||||||||||||||| |||| |  | |||| |||| |||||||||||| |||||||||    
T  3179329 cataactcagttggtagaacaatgcattattatatgcaggggtcgaggttcgaacctcagacaccccacttattcacc 3179406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 22297542 - 22297465
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgc-tgggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| ||  ||||| ||||  | |||||||||||||||||||    
T  22297542 catagctcagttggtaggacaatgcattattatatgcaggggcaggggttcgaaccccggacaccccatttattcacc 22297465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Complemental strand, 30474285 - 30474208
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctg-ggtttgaacttcagacaccccatttattcacc 365  Q
    |||| |||||||||| ||||||||||||||||||| |||| || | |||| ||||  ||||||||||| |||||||||    
T  30474285 catagctcagttggtaggacaatgcattattatatgcaggggccgaggttcgaaccccagacaccccacttattcacc 30474208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 364
Target Start/End: Complemental strand, 38530280 - 38530208
Alignment:
Q  295 ctcagttggt-ggacaatgcattattatattcaggtgct--gggtttgaacttcagacaccccatttattcac 364  Q
    |||||||||| ||||||||||||||||||| |||| |||  ||||| ||||| | ||||||||| ||||||||    
T  38530280 ctcagttggtaggacaatgcattattatatacaggggcttggggttcgaactgcggacaccccacttattcac 38530208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 34792933 - 34792895
Alignment:
Q  290 cataactcagttggtggacaatgcattattatattcagg 328  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  34792933 catagctcagttggtggacaatgcattattatatgcagg 34792895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 290 - 338
Target Start/End: Original strand, 159019 - 159068
Alignment:
Q  290 cataactcagttggt-ggacaatgcattattatattcaggtgctgggttt 338  Q
    ||||||||||||||| ||||||||||||||||||| |||| || ||||||    
T  159019 cataactcagttggtaggacaatgcattattatatgcaggggccgggttt 159068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University