View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2751_low_2 (Length: 729)

Name: NF2751_low_2
Description: NF2751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2751_low_2
NF2751_low_2
[»] chr4 (15 HSPs)
chr4 (401-716)||(45363588-45363890)
chr4 (401-716)||(45382407-45382709)
chr4 (19-235)||(45353813-45354030)
chr4 (19-235)||(45363292-45363509)
chr4 (501-716)||(45374923-45375130)
chr4 (401-603)||(45354109-45354298)
chr4 (401-603)||(45356670-45356859)
chr4 (401-603)||(45370411-45370600)
chr4 (77-235)||(45356435-45356591)
chr4 (77-235)||(45370176-45370332)
chr4 (148-235)||(45382241-45382328)
chr4 (145-284)||(45388919-45389057)
chr4 (289-336)||(48872906-48872953)
chr4 (289-336)||(48878210-48878257)
chr4 (289-338)||(48865845-48865894)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 401 - 716
Target Start/End: Original strand, 45363588 - 45363890
Alignment:
Q  401 gaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||     |||||||||||    
T  45363588 gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataactga-----aattgctaata 45363682  T
Q  501 caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  45363683 caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga 45363774  T
Q  601 gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45363775 gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta 45363874  T
Q  701 tattagagttcatctc 716  Q
    ||||||||||||||||    
T  45363875 tattagagttcatctc 45363890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 401 - 716
Target Start/End: Original strand, 45382407 - 45382709
Alignment:
Q  401 gaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||     |||||||||||    
T  45382407 gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataactga-----aattgctaata 45382501  T
Q  501 caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  45382502 caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga 45382593  T
Q  601 gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382594 gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta 45382693  T
Q  701 tattagagttcatctc 716  Q
    ||||||||||||||||    
T  45382694 tattagagttcatctc 45382709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 45353813 - 45354030
Alignment:
Q  19 caatatgctcatcactacctaaacaaacacaaaacaattaaacctctaggaatatatgaaagaacctagaaaagaaatatgtaaacctggtaacagatta 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45353813 caatatgctcctcactacctaaacaaacacaaaacaattaaacctctaggaatatatgaaagaacctagaaaagaaatatgtaaacctggtaacagatta 45353912  T
Q  119 tatacacgatgagtcagcatgtcatt-acgcctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtg 217  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45353913 tatacacgatgagtcagcatgtcgttaacccctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtg 45354012  T
Q  218 aaggtttgaacttggtgt 235  Q
    ||||||||||||||||||    
T  45354013 aaggtttgaacttggtgt 45354030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 45363292 - 45363509
Alignment:
Q  19 caatatgctcatcactacctaaacaaacacaaaacaattaaacctctaggaatatatgaaagaacctagaaaagaaatatgtaaacctggtaacagatta 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45363292 caatatgctcctcactacctaaacaaacacaaaacaattaaacctctaggaatatatgaaagaacctagaaaagaaatatgtaaacctggtaacagatta 45363391  T
Q  119 tatacacgatgagtcagcatgtcatt-acgcctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtg 217  Q
    ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45363392 tatacacgatgagtcagcatgtcgttaacccctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtg 45363491  T
Q  218 aaggtttgaacttggtgt 235  Q
    ||||||||||||||||||    
T  45363492 aaggtttgaacttggtgt 45363509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 175; E-Value: 8e-94
Query Start/End: Original strand, 501 - 716
Target Start/End: Original strand, 45374923 - 45375130
Alignment:
Q  501 caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||        | |||||||||||||||||||||||||||||||||||||    
T  45374923 caattctgataaagaattgtaaatcaatcagtacgatggttaattgctaaaaa--------gctcaaagcctaacaagagagaataacagaaacaggaga 45375014  T
Q  601 gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtatccccaatcattactaaaacttcccttaaatacaattcctcactaatta 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45375015 gaagggacataattccaagaaggcagaggaatgttcttctaatcaatagtctccccaatcattactaaaacttcccttaaatacaattcctcactaatta 45375114  T
Q  701 tattagagttcatctc 716  Q
    ||||||||||||||||    
T  45375115 tattagagttcatctc 45375130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 401 - 603
Target Start/End: Original strand, 45354109 - 45354298
Alignment:
Q  401 gaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     |||||||||||||||    
T  45354109 gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaata 45354203  T
Q  501 caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||    
T  45354204 caattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggaga 45354295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 401 - 603
Target Start/End: Original strand, 45356670 - 45356859
Alignment:
Q  401 gaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     |||||||||||||||    
T  45356670 gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaata 45356764  T
Q  501 caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||    
T  45356765 caattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggaga 45356856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 401 - 603
Target Start/End: Original strand, 45370411 - 45370600
Alignment:
Q  401 gaagctgcaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattgcaactgatctgaaattgctaata 500  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||     |||||||||||||||    
T  45370411 gaagctgtaaggatttgcaggtagagaaatgcaagaaatcctcaattgatattcaatagaacagtataatgagattataa-----ctgaaattgctaata 45370505  T
Q  501 caattctgataaagaattgtaaatcaatcagtacaatggttaattgctaaaaaagggaaaaggtcaaagcctaacaagagagaataacagaaacaggaga 600  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||        ||||| |||||||||||||||||||||||||||||||||||||    
T  45370506 caattctgataaagaattgtaaatcaatcagtacgatggttaattgcta--------aaaagctcaaagcctaacaagagagaataacagaaacaggaga 45370597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 45356435 - 45356591
Alignment:
Q  77 aaagaacctagaaaagaaatatgtaaacctggtaacagattatatacacgatgagtcagcatgtcatta-cgcctgagcctgaaacccgaataagcttat 175  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||  |||||||||||| ||| ||| | ||||||||||||||||||||||||||||    
T  45356435 aaagaacctagaaa-gaactatgtaaacctggtaacagattagatac--gatgagtcagcacgtcgttaacccctgagcctgaaacccgaataagcttat 45356531  T
Q  176 caaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45356532 caaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgt 45356591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 77 - 235
Target Start/End: Original strand, 45370176 - 45370332
Alignment:
Q  77 aaagaacctagaaaagaaatatgtaaacctggtaacagattatatacacgatgagtcagcatgtcatta-cgcctgagcctgaaacccgaataagcttat 175  Q
    |||||||||||||| ||| ||||||||||||||||||||||| ||||  |||||||||||| ||| ||| | ||||||||||||||||||||||||||||    
T  45370176 aaagaacctagaaa-gaactatgtaaacctggtaacagattagatac--gatgagtcagcacgtcgttaacccctgagcctgaaacccgaataagcttat 45370272  T
Q  176 caaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45370273 caaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgt 45370332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 45382241 - 45382328
Alignment:
Q  148 cctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45382241 cctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgt 45382328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 45389057 - 45388919
Alignment:
Q  145 acgcctgagcctgaaacccgaataagcttatcaaaccattccttttgatataatccaccaggtgctatgggtgaaggtttgaacttggtgttcttttata 244  Q
    ||||||| ||||||||||  || ||||||||||||||||||||||||||| || || || ||||||||  |||| |||||||||||||||| ||| ||||    
T  45389057 acgcctgtgcctgaaacctcaagaagcttatcaaaccattccttttgatagaaacctcctggtgctataagtgatggtttgaacttggtgtacttgtata 45388958  T
Q  245 gtgtgtgtaaatttttgtttaagctttatgaagtttttcc 284  Q
    || ||| |||| |||||||||||||| || |||| |||||    
T  45388957 gtttgtttaaa-ttttgtttaagcttgatcaagtctttcc 45388919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 48872953 - 48872906
Alignment:
Q  289 ttgacattttacaatttcatgaaacaatacaccataggaggatcacac 336  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| |||||    
T  48872953 ttgacattttacaatttcatgaaaaaatgcaccagaggaggaacacac 48872906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 48878257 - 48878210
Alignment:
Q  289 ttgacattttacaatttcatgaaacaatacaccataggaggatcacac 336  Q
    |||||||||||||||||||||||| ||| ||||| ||||||| |||||    
T  48878257 ttgacattttacaatttcatgaaaaaatgcaccagaggaggaacacac 48878210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 289 - 338
Target Start/End: Complemental strand, 48865894 - 48865845
Alignment:
Q  289 ttgacattttacaatttcatgaaacaatacaccataggaggatcacacgt 338  Q
    |||||||||||||||||||||||||||| || |  ||||||| |||||||    
T  48865894 ttgacattttacaatttcatgaaacaatgcatccaaggaggaacacacgt 48865845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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