View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2751_low_3 (Length: 575)
Name: NF2751_low_3
Description: NF2751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2751_low_3 |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 131 - 565
Target Start/End: Complemental strand, 14371611 - 14371186
Alignment:
| Q |
131 |
aaggaaaacactaaagcttattatttgattctcttgtgttcggacaattcggaaagagcggaataatagaatttttagcaataaggaagactcaattcat |
230 |
Q |
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| T |
14371611 |
aaggaaaacactaaagcttattatttaattctcttgtgttcggacaattcggaaagagcggaataatagaatttttagcaataaggaagacttaattcat |
14371512 |
T |
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| Q |
231 |
catcatctcttgggcaaagccaagttactatcttattagtgaccgaaggcaaaatatgttaatgtagcttttagttatcataatgagtgactttagtccc |
330 |
Q |
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| T |
14371511 |
catcatctcttgggcaaagccaagttactatcttattagtgaccgaaggcaaaatatgttaatgtagcttttagttatcataatgagtgactttagtccc |
14371412 |
T |
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| Q |
331 |
tt-ttttgtttgggtgttgactaataactctattttatttgttcacttttgttccctttcatgttggtttgattatcttctgtaagactttgttgttctt |
429 |
Q |
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| T |
14371411 |
tttttttgtttgggcgttgactaataactctatttta----------tttgttccctttcatgttggtttgattatcttttgtaagactctgctgttctt |
14371322 |
T |
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| Q |
430 |
ttctagtacaccttataataggaagaatgttttttgctggtaatatatttcatttcgacttgttaaaaacatatataaattgctggtttactggaataaa |
529 |
Q |
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| T |
14371321 |
ctctagtactctttgtactaggaagaatgttttttgctggtaatatatttcattttgacttgttaaaaacatgtataaattggtggtttactggaataaa |
14371222 |
T |
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| Q |
530 |
atgaaataaaactatatgattttccattgtattcat |
565 |
Q |
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| T |
14371221 |
atgaaataaaactatatgattttccattgtattcat |
14371186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 21355322 - 21355387
Alignment:
| Q |
246 |
aaagccaagttactatcttattagtgaccgaaggcaaaatatgttaatgtagcttttagttatcat |
311 |
Q |
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| T |
21355322 |
aaagtcaagttactattttattggtggccgaatgcaaaatatgttaatttagcttttggttatcat |
21355387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 232
Target Start/End: Original strand, 27762 - 27794
Alignment:
| Q |
200 |
aatttttagcaataaggaagactcaattcatca |
232 |
Q |
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| T |
27762 |
aatttttagcaataaggaagactcaattcatca |
27794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 181 - 311
Target Start/End: Original strand, 16070728 - 16070855
Alignment:
| Q |
181 |
ggaaagagcggaataatagaatttttagcaataaggaagactcaattcatcatcatctcttgggcaaagccaagttactatcttattagtgaccgaaggc |
280 |
Q |
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| T |
16070728 |
ggaaagagcggaatactagaatatttagttaaaagaaagactctattcatcatt---tattggataaagtcaagctactatcttattgatggctgaaggc |
16070824 |
T |
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| Q |
281 |
aaaatatgttaatgtagcttttagttatcat |
311 |
Q |
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| T |
16070825 |
aaaatacgttagttttgcttttggttatcat |
16070855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 37215017 - 37215077
Alignment:
| Q |
251 |
caagttactatcttattagtgaccgaaggcaaaatatgttaatgtagcttttagttatcat |
311 |
Q |
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| T |
37215017 |
caagttactttcctattggtggctgaaggcaaaatatgttaatttagctttcggttatcat |
37215077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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