View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2751_low_6 (Length: 471)

Name: NF2751_low_6
Description: NF2751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2751_low_6
NF2751_low_6
[»] chr8 (2 HSPs)
chr8 (1-449)||(32496440-32496894)
chr8 (92-162)||(32495705-32495776)
[»] chr2 (2 HSPs)
chr2 (243-323)||(37882993-37883073)
chr2 (370-402)||(6853449-6853481)
[»] chr7 (1 HSPs)
chr7 (277-323)||(27048996-27049042)
[»] chr3 (2 HSPs)
chr3 (239-308)||(1649061-1649130)
chr3 (92-148)||(25287832-25287888)
[»] chr1 (2 HSPs)
chr1 (95-148)||(5828687-5828740)
chr1 (274-350)||(35875538-35875616)


Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 32496440 - 32496894
Alignment:
Q  1 acacaacttctattcctcttttggttgacacattgctctgatgttgttggaaaaacaatcggaaaaaatatctacaaagtggaagtacaacgacaaaaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||     
T  32496440 acacaacttctattcctcttttggttgacacattgctctgatgttgttggaaaaacaatcgaaaaaaatatctacaaagtggaagtacaacgaccaaaaa 32496539  T
Q  101 aa------------ctaacgagattgtggtttggaacttcatacctacatccataatctcacgataaaatatttattaatgaatctacaatattttatat 188  Q
    ||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32496540 aaagacaaaaatggctaacgagattgtggtttggaacttcatacctacatccataatctcacgataaaatatttattaatgaatctacaatattttatat 32496639  T
Q  189 gaaaaatggcaaacctctttatacatttttatggacaaaattgcaaattctctcaactctcatagaattgtaatttctatatgagcaaaattgcaaacct 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||   ||||||||||| || ||||||||||||||||||||    
T  32496640 gaaaaatggcaaacctctttatacatttttatggacaaaattgcaaattct------tctcacgcaattgtaatttttaaatgagcaaaattgcaaacct 32496733  T
Q  289 ctcaattataatttttgcacagagaaattgcaaactctcttatgacacacaactatacaaacttctagtacatccattattctagagatgttgtggtgaa 388  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32496734 ctcaattataatttttgcacagagaaattgcaaattctcttatgacacacaactatacaaactcctagtacatccattattctagagatgttgtggtgaa 32496833  T
Q  389 gaaatctcaatataccttgctatatttattataaccttctaactcatttttcgtctcacta 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32496834 gaaatctcaatataccttgctatatttattataaccttctaactcatttttcgtctcacta 32496894  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 162
Target Start/End: Original strand, 32495705 - 32495776
Alignment:
Q  92 gacaaaaataactaacgagattgtggtttggaacttc--atacctacatccataatctcacgataaaatattt 162  Q
    ||||||||||||| || |||||||||||||| | |||  |||||||||||||||||||| | | |||||||||    
T  32495705 gacaaaaataactcacaagattgtggtttgg-atttcatatacctacatccataatctctcaacaaaatattt 32495776  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 323
Target Start/End: Original strand, 37882993 - 37883073
Alignment:
Q  243 aactctcatagaattgtaatttctatatgagcaaaattgcaaacctctcaattataatttttgcacagagaaattgcaaac 323  Q
    |||||||| | |||| |||||| |||| |  |||||||||||||||||| |||| ||||||||||  || |||||||||||    
T  37882993 aactctcacacaattctaatttttataaggacaaaattgcaaacctctcgattacaatttttgcatggaaaaattgcaaac 37883073  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 402
Target Start/End: Original strand, 6853449 - 6853481
Alignment:
Q  370 ctagagatgttgtggtgaagaaatctcaatata 402  Q
    ||||||||||||||||||||||||| |||||||    
T  6853449 ctagagatgttgtggtgaagaaatcacaatata 6853481  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 323
Target Start/End: Original strand, 27048996 - 27049042
Alignment:
Q  277 aattgcaaacctctcaattataatttttgcacagagaaattgcaaac 323  Q
    |||||||||||||||||||  ||||||||||| || |||||||||||    
T  27048996 aattgcaaacctctcaattgcaatttttgcacggaaaaattgcaaac 27049042  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 1649130 - 1649061
Alignment:
Q  239 tctcaactctcatagaattgtaatttctatatgagcaaaattgcaaacctctcaattataatttttgcac 308  Q
    |||||| ||||| | ||||| ||||| |||| || || ||| ||||||||||||||| ||||||||||||    
T  1649130 tctcaattctcacacaattgcaatttttataagaacataatcgcaaacctctcaattttaatttttgcac 1649061  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 25287888 - 25287832
Alignment:
Q  92 gacaaaaataactaacgagattgtggtttggaacttcatacctacatccataatctc 148  Q
    ||||||||||||| || ||||||||||| |  ||||||||||||||| || ||||||    
T  25287888 gacaaaaataactcacaagattgtggttcgacacttcatacctacattcacaatctc 25287832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 5828740 - 5828687
Alignment:
Q  95 aaaaataactaacgagattgtggtttggaacttcatacctacatccataatctc 148  Q
    ||||| |||| || ||||||||||| || |||||||||||||||||| ||||||    
T  5828740 aaaaaaaactcacaagattgtggttcggcacttcatacctacatccacaatctc 5828687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 35875538 - 35875616
Alignment:
Q  274 caaaattgcaaacctctcaattataatttttgca-cagagaaattgc--aaactctcttatgacacacaactatacaaac 350  Q
    |||||||||||||||||||||||||| | |||||  ||| |||||||  ||||||||| |||||| |||||||| |||||    
T  35875538 caaaattgcaaacctctcaattataagtcttgcatgaga-aaattgcaaaaactctctcatgacatacaactatccaaac 35875616  T

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