View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_high_13 (Length: 418)
Name: NF2752_high_13
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_high_13 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 26414509 - 26414905
Alignment:
| Q |
1 |
acacagggctagaatgtataacgtagtattcaaatttgagttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26414509 |
acacagggctagaatgtataacgtagtattcaaatttgagttatgaattgttgaaattttaatgagccatcaaggttgaaatagatctaactcttataag |
26414608 |
T |
|
| Q |
101 |
tagaatggctagaaaatgaaatcatacaaatcctcctagtggcttgcacacctcaaatctagcnnnnnnnnnnnnnngaagaatcaattctagctttttc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||| ||||| |
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| T |
26414609 |
tagaatggctagaaaatgaaatcatacaaatcctcctagtggcttgcacacctcaaatctagctttttcttttttttgaaaaatcaaatctagccttttc |
26414708 |
T |
|
| Q |
201 |
tattttcgagcaaatacacaaccaaagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
26414709 |
tattttcgagcaaatacacaaccaaagtaaaaattaaatactaaaactaagctttaataagaggtaccataatatgctagagcccata--attcacacat |
26414806 |
T |
|
| Q |
301 |
tatttcaagtacattgtctaaccaatcacactaaatatagcattatttcaattgttattgtacataggaccatttgaattaacaaaatttggaagtacc |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26414807 |
tatttcaagtacattgtctaaccaatcacactaaatatagcattatttcaattgttattgtacataggaccatttgaattaacaaaatttggaagtacc |
26414905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 27986510 - 27986404
Alignment:
| Q |
1 |
acacagggctagaatgtataacgtagtattcaaatttgagttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataag |
100 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
27986510 |
acacagagctagaatggataacgtagtattcaaatttgagttatgaattgttgaaattgtaatgagtcatcaaggttgaaatagatctaacacttgtaag |
27986411 |
T |
|
| Q |
101 |
tagaatg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
27986410 |
tagaatg |
27986404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 28073042 - 28072936
Alignment:
| Q |
1 |
acacagggctagaatgtataacgtagtattcaaatttgagttatgaattgttgaaattttaatgagtcatcaaggttgaaatagatctaactcttataag |
100 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
28073042 |
acacagagctagaatggataacgtagtattcaaatttgagttatgaattgttgaaattgtaatgagtcatcaaggttgaaatagatctaacacttgtaag |
28072943 |
T |
|
| Q |
101 |
tagaatg |
107 |
Q |
| |
|
||||||| |
|
|
| T |
28072942 |
tagaatg |
28072936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 342
Target Start/End: Complemental strand, 27985996 - 27985896
Alignment:
| Q |
240 |
actaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaaccaatcacactaaatata |
339 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||| ||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
27985996 |
actaaaactaagctttaataagagatatcatcatatgctttagcccata--atttatacattatttcaagtacattgtctgaccaatcacactaaatata |
27985899 |
T |
|
| Q |
340 |
gca |
342 |
Q |
| |
|
||| |
|
|
| T |
27985898 |
gca |
27985896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 342
Target Start/End: Complemental strand, 28072527 - 28072427
Alignment:
| Q |
240 |
actaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaaccaatcacactaaatata |
339 |
Q |
| |
|
|||||||||||||||||||||||| || ||| ||||||| ||||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
28072527 |
actaaaactaagctttaataagagatatcatcatatgctttagcccata--atttatacattatttcaagtacattgtctgaccaatcacactaaatata |
28072430 |
T |
|
| Q |
340 |
gca |
342 |
Q |
| |
|
||| |
|
|
| T |
28072429 |
gca |
28072427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 225 - 331
Target Start/End: Original strand, 28179918 - 28180022
Alignment:
| Q |
225 |
aagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaacca |
324 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||| |||||| |||||| |||||||||| ||||||||||||||||||||||||||| | |||| |
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|
| T |
28179918 |
aagtcgaaatcaaatactaaaactaagcttcgataagaattaccatcatatgcaatagcccata--attcacacattatttcaagtacattgtatgacca |
28180015 |
T |
|
| Q |
325 |
atcacac |
331 |
Q |
| |
|
||||||| |
|
|
| T |
28180016 |
atcacac |
28180022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 225 - 333
Target Start/End: Original strand, 28153427 - 28153534
Alignment:
| Q |
225 |
aagtagaaattaaatactaaaactaagctttaataagagg-taccataatatgctatagcccatataattcacacattatttcaagtacattgtctaacc |
323 |
Q |
| |
|
|||||||||| ||||||||||| ||||||| ||||||| |||||| |||| |||||||||||| |||||||||||||||| |||||||||||| ||| |
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|
| T |
28153427 |
aagtagaaatcaaatactaaaattaagcttcaataagaaactaccatcatattctatagcccata--attcacacattatttctagtacattgtctgacc |
28153524 |
T |
|
| Q |
324 |
aatcacacta |
333 |
Q |
| |
|
|||||||||| |
|
|
| T |
28153525 |
aatcacacta |
28153534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 228 - 315
Target Start/End: Original strand, 28172170 - 28172256
Alignment:
| Q |
228 |
tagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacatt |
315 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||| | |||| |||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
28172170 |
tagaaatcaaatactaaaactatgctttaataagagatgccatcatatgctatagctc-cataattcacacattatttcaagtacatt |
28172256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 27995154 - 27995121
Alignment:
| Q |
76 |
ttgaaatagatctaactcttataagtagaatggc |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
27995154 |
ttgaaacagatctaactcttataagtagaatggc |
27995121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 28081688 - 28081655
Alignment:
| Q |
76 |
ttgaaatagatctaactcttataagtagaatggc |
109 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
28081688 |
ttgaaacagatctaactcttataagtagaatggc |
28081655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 225 - 342
Target Start/End: Complemental strand, 24747553 - 24747438
Alignment:
| Q |
225 |
aagtagaaattaaatactaaaactaagctttaataagaggtaccataatatgctatagcccatataattcacacattatttcaagtacattgtctaacca |
324 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| || ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
24747553 |
aagtagaaatcaaatactaaaactaagctttgataagagatatcatcatatgctatagcccata--attcacacattatttcaagtacattgtcggacca |
24747456 |
T |
|
| Q |
325 |
atcacactaaatatagca |
342 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
24747455 |
atcacactaaatatagca |
24747438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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