View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_high_20 (Length: 355)

Name: NF2752_high_20
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_high_20
NF2752_high_20
[»] chr7 (3 HSPs)
chr7 (13-338)||(697686-698006)
chr7 (211-287)||(25066569-25066646)
chr7 (248-284)||(12846644-12846680)
[»] chr8 (2 HSPs)
chr8 (211-287)||(44953023-44953099)
chr8 (233-290)||(7970063-7970120)
[»] chr5 (2 HSPs)
chr5 (144-184)||(9358508-9358548)
chr5 (248-284)||(33281635-33281671)
[»] chr4 (2 HSPs)
chr4 (205-287)||(7817773-7817856)
chr4 (248-292)||(43457464-43457508)
[»] chr3 (4 HSPs)
chr3 (205-286)||(23482671-23482753)
chr3 (220-287)||(50508404-50508472)
chr3 (211-284)||(7681023-7681097)
chr3 (248-284)||(33711952-33711988)
[»] scaffold0896 (1 HSPs)
scaffold0896 (211-287)||(3757-3834)
[»] chr6 (2 HSPs)
chr6 (211-287)||(7080972-7081049)
chr6 (211-287)||(8811310-8811387)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 698006 - 697686
Alignment:
Q  13 agtgagaagaagtttatatattattgtaataacaaggaaccgtgctgaccaaggaacgtggggtgcaaggaattaaacagtcaaattacttatatttact 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  698006 agtgagaagaagtttatatattattgtaataacaaggaaccgtgctgaccaaggaacgtggggtgcaaggaattaaacagtcaaattacttatatttact 697907  T
Q  113 tactggtttttgtgactgtgttattattttgactgcagccattggatcaaagcaatgcttcagattcactttactccaagatgaagaaactgaagattaa 212  Q
         | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  697906 -----ggtgttgtgactgtgttattattttgactgcagccattggatcaaagcaatgcttcagattcactttactccaagatgaagaaactgaagattaa 697812  T
Q  213 attaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattcgaaaatactctcaaataagaacgtc 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  697811 attaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattcaaaaatactctcaaataagaacgtc 697712  T
Q  313 atttctatattttcagacataatttt 338  Q
    ||||||||||||||||||||||||||    
T  697711 atttctatattttcagacataatttt 697686  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 25066569 - 25066646
Alignment:
Q  211 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    ||||||||||||| | ||||||| |||| || ||||| |||||||| |||| || ||||||||||| |||||||||||    
T  25066569 aaattaaattttactaaaggataattttgtcattttagggtgtaacaagaattaaatagggtgtaactagaaaaattc 25066646  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 12846680 - 12846644
Alignment:
Q  248 ggtgtaaccagaaatacatagggtgtaattagaaaaa 284  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  12846680 ggtgtaaccagaaatatatagggtgtaaatagaaaaa 12846644  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 44953099 - 44953023
Alignment:
Q  211 aaattaaattttatttaaggatattttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    ||||||||||| |||||| |||| ||| || ||||| ||||||||||  |||||||||||||| |||||||||||||    
T  44953099 aaattaaatttcatttaaagataatttatcattttaaggtgtaaccatgaatacatagggtgtgattagaaaaattc 44953023  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 290
Target Start/End: Original strand, 7970063 - 7970120
Alignment:
Q  233 attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattcgaa 290  Q
    ||||| || ||||| ||||||| |||||||| | |||||||||||||||||| |||||    
T  7970063 attttgtcattttagggtgtaatcagaaatataaagggtgtaattagaaaaagtcgaa 7970120  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 9358508 - 9358548
Alignment:
Q  144 actgcagccattggatcaaagcaatgcttcagattcacttt 184  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9358508 actgcagccattggatcaaagcaatgcttcagattcacttt 9358548  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 33281635 - 33281671
Alignment:
Q  248 ggtgtaaccagaaatacatagggtgtaattagaaaaa 284  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33281635 ggtgtaaccagaaaaacatagggtgtaaatagaaaaa 33281671  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 287
Target Start/End: Complemental strand, 7817856 - 7817773
Alignment:
Q  205 aagattaaattaaattttatttaaggat-attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    |||||||||||||||||||||||||||| ||||| || |||||  ||||||  || ||||| ||  ||||||||||||||||||    
T  7817856 aagattaaattaaattttatttaaggataattttgtcattttagagtgtaattaggaatacgtattgtgtaattagaaaaattc 7817773  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 43457508 - 43457464
Alignment:
Q  248 ggtgtaaccagaaatacatagggtgtaattagaaaaattcgaaaa 292  Q
    |||||||||||||||| ||||||||| | |||||||| |||||||    
T  43457508 ggtgtaaccagaaatatatagggtgtgaatagaaaaactcgaaaa 43457464  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 286
Target Start/End: Complemental strand, 23482753 - 23482671
Alignment:
Q  205 aagattaaattaaattttatttaaggat-attttttcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaatt 286  Q
    |||||||||||||||||||||||||||| ||||| || |||||  |||||||||  |||||||    ||||||||||||||||    
T  23482753 aagattaaattaaattttatttaaggataattttatcattttagtgtgtaaccatgaatacatgaaatgtaattagaaaaatt 23482671  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 287
Target Start/End: Original strand, 50508404 - 50508472
Alignment:
Q  220 tttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    |||||||||||||| |||| || ||||| ||||||||||| |||  || ||||||||||||||||||||    
T  50508404 tttatttaaggataattttatcattttagggtgtaaccaggaatgtatggggtgtaattagaaaaattc 50508472  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 284
Target Start/End: Original strand, 7681023 - 7681097
Alignment:
Q  211 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaa 284  Q
    ||||||||||||||  |||| || |||| || ||||| |||| |||||||| || ||||||||||||||||||||    
T  7681023 aaattaaattttatggaagggtaattttgtcattttagggtgcaaccagaattaaatagggtgtaattagaaaaa 7681097  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 33711988 - 33711952
Alignment:
Q  248 ggtgtaaccagaaatacatagggtgtaattagaaaaa 284  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  33711988 ggtgtaaccagaaaaacatagggtgtaaatagaaaaa 33711952  T

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Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 3757 - 3834
Alignment:
Q  211 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| |  ||||||||||||||||||||    
T  3757 aaatcaaattttatgtaaggataattttatcattttggggtgtaaccaggaatatacggggtgtaattagaaaaattc 3834  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 7081049 - 7080972
Alignment:
Q  211 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| | || ||||||||||||||||||    
T  7081049 aaatcaaattttatctaaggataattttatcattttggggtgtaaccaggaatatacagtgtgtaattagaaaaattc 7080972  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 8811310 - 8811387
Alignment:
Q  211 aaattaaattttatttaaggatattttt-tcgttttatggtgtaaccagaaatacatagggtgtaattagaaaaattc 287  Q
    |||| ||||||||| |||||||| |||| || ||||  ||||||||||| |||| |  ||||||||||||||||||||    
T  8811310 aaatcaaattttatgtaaggataattttatcattttggggtgtaaccaggaatatacggggtgtaattagaaaaattc 8811387  T

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