View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_high_21 (Length: 330)
Name: NF2752_high_21
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_high_21 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 5 - 317
Target Start/End: Complemental strand, 39077977 - 39077661
Alignment:
| Q |
5 |
gagagagaagaaaatagaaaagagtattttaccaattcctatacaaaattatatttcatttcacacgacacaacaatacaaatacaaa------gaacgt |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39077977 |
gagagaaaagaaaatagaaaagagtattttaccaattcctatacaaaattatatttcatttcacacgacacaacaatacaaatacaaatacaaagaacgg |
39077878 |
T |
|
| Q |
99 |
gtggagcagttagcaacaagagtttttccttnnnnnnn-gtaacgagattttgataatacaatgtaccatgcacaagatataaatatagtattaattaag |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39077877 |
gtggagcagttagcaacaagagtttttccttaaaaaaaagtaacgagattttgataatacaatgtaccatgcacaagatataaatata---ttaattaag |
39077781 |
T |
|
| Q |
198 |
tcaaaaagggttaaaatatctatatcatcatcattgttagaaagaaacaatagcaacaacaacaaaacacgtttaatttattttatcagcaaagggagtg |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39077780 |
tcaaaaagggttaaaatatctatatcatcatcattgttagaaagaaacaatagcaacaacaacaaaacacgtttaatttattttatcagcaaagggagtg |
39077681 |
T |
|
| Q |
298 |
tctgcttctcctctcttttg |
317 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
39077680 |
tctgcttctcctctcttttg |
39077661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University