View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_high_24 (Length: 324)
Name: NF2752_high_24
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 69 - 290
Target Start/End: Original strand, 3311922 - 3312143
Alignment:
| Q |
69 |
tggaagactatattgaccaaattgagnnnnnnnatagatgaaagaaccaaccaagaaattgatggaggaaaacaagggaagggtgcagtgatggtgttgt |
168 |
Q |
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| T |
3311922 |
tggaagactatattgaccaaattgagttcttttacagatgaaagaaccaaccaagaaattgatggaggaaaataagggaagggtgcagtgatggtgttgt |
3312021 |
T |
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| Q |
169 |
cgactcctaattcgacattcttgaagaaatttttaaattcaatgttggcaagaatagttattgtcctcatccttgaaggacaaaatagtgtttatagtat |
268 |
Q |
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| T |
3312022 |
cgactcctaattcgacattcatgaagaaatttttaacttcaatattgccaagaatagttattgtcctcatccttgaaggacaaaatagtgtttatagtat |
3312121 |
T |
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| Q |
269 |
cattttaatttcaagttttata |
290 |
Q |
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|||||||||||||||||||||| |
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| T |
3312122 |
cattttaatttcaagttttata |
3312143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 3333514 - 3333660
Alignment:
| Q |
18 |
cttgattaacatttcacaattctatgaatcattttaaagtattgataatgttggaagactatattgaccaaattgagnnnnnnn-atagatgaaagaacc |
116 |
Q |
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|||||||||||| |||||| ||||||| || ||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
3333514 |
cttgattaacatgtcacaaatctatga-tcgttttaaattattgat------ggaagactatattgatcaaattgagttttttttatagatgaaagaacc |
3333606 |
T |
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| Q |
117 |
aaccaagaaattgatggaggaaaacaagggaagggtgcagtgatggtgttgtcgact |
173 |
Q |
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|||||||||||||||||| ||||| ||| |||| || || ||||||||||||||| |
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| T |
3333607 |
aaccaagaaattgatggatgaaaataagagaagtgt---gtcatggtgttgtcgact |
3333660 |
T |
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