View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_high_26 (Length: 322)

Name: NF2752_high_26
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_high_26
NF2752_high_26
[»] chr4 (8 HSPs)
chr4 (21-322)||(25168882-25169183)
chr4 (21-322)||(25252071-25252388)
chr4 (209-319)||(25180553-25180663)
chr4 (65-160)||(25180746-25180841)
chr4 (209-305)||(25160339-25160435)
chr4 (21-58)||(25180934-25180971)
chr4 (83-126)||(25160542-25160585)
chr4 (219-291)||(25039022-25039094)
[»] chr2 (6 HSPs)
chr2 (215-312)||(42167486-42167583)
chr2 (210-312)||(42156988-42157090)
chr2 (210-312)||(42290330-42290432)
chr2 (73-139)||(42290162-42290228)
chr2 (73-139)||(42157196-42157262)
chr2 (86-123)||(42167707-42167744)
[»] chr3 (3 HSPs)
chr3 (218-293)||(9213394-9213469)
chr3 (83-143)||(9213238-9213298)
chr3 (223-274)||(8139397-8139448)
[»] chr6 (2 HSPs)
chr6 (217-275)||(29422787-29422845)
chr6 (217-273)||(29460248-29460304)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 322
Target Start/End: Complemental strand, 25169183 - 25168882
Alignment:
Q  21 catacagattttccatatcttggtctagaatactcccagatgggaaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169183 catacagattttccatatcttggtctagaatactcccagatgggaaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaa 25169084  T
Q  121 tgagttggtggcaaatggtaagaatacaagcttcattttcgtttatgctttgcattttagcatattctaatatagccatctcatgtcacaggtttacaac 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25169083 tgagttggtggcaaatggtaagaatacaaacttcattttcgtttatgctttgcattttagcatattctaatatagccatctcatgtcacaggtttacaac 25168984  T
Q  221 catttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgagtgatacaatttcaaat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||    
T  25168983 catttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatggcggtttcttaagtcctctcatcatgtgagtgatacaatttcaaat 25168884  T
Q  321 tt 322  Q
    ||    
T  25168883 tt 25168882  T

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Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 322
Target Start/End: Original strand, 25252071 - 25252388
Alignment:
Q  21 catacagattttccatatcttggtctagaatactcccagatgggaaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaa 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25252071 catacagattttccatatcttggtctagaatactcccagatgggaaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaa 25252170  T
Q  121 tgagttggtggcaaatggtaagaatacaagcttcattttcgttt----------------atgctttgcattttagcatattctaatatagccatctcat 204  Q
    ||||||||||||||||||||||||||||| ||||||||||||||                ||||||||||||||| ||||||||||||||||||||||||    
T  25252171 tgagttggtggcaaatggtaagaatacaaacttcattttcgtttattaggttgtatactaatgctttgcattttaacatattctaatatagccatctcat 25252270  T
Q  205 gtcacaggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgag 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||    
T  25252271 gtcacaggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatggcggattcttaagtcctctcatcatgtgag 25252370  T
Q  305 tgatacaatttcaaattt 322  Q
    ||||||||||||||||||    
T  25252371 tgatacaatttcaaattt 25252388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 25180663 - 25180553
Alignment:
Q  209 caggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgagtgat 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| |||||||||||||     
T  25180663 caggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatggcggcttcttaagtcctctcatcatgtgagtgac 25180564  T
Q  309 acaatttcaaa 319  Q
    |||||||||||    
T  25180563 acaatttcaaa 25180553  T

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Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 25180841 - 25180746
Alignment:
Q  65 aaactaagtggaggaattaatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggtaagaatacaagcttcattttc 160  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||  |||| |||||| ||||||||||||||| || ||||||||||    
T  25180841 aaactaagtggaggaattaatcaagaaggaattgactattacaataatctcattgatgaattggtgacaaatggtaagaatataaacttcattttc 25180746  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 25160435 - 25160339
Alignment:
Q  209 caggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgagt 305  Q
    ||||| |||||||||| || |||||||| ||||||||||||||||||||| ||||||| || ||| | || |||||||| ||||||||  |||||||    
T  25160435 caggtatacaaccattagtgactcttttccattgggatcttcctcaaactttagaagaagagtatggtggcttcttaagtcctcttatagtgtgagt 25160339  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 25180971 - 25180934
Alignment:
Q  21 catacagattttccatatcttggtctagaatactccca 58  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25180971 catacagattttccatatcttggtctagaatactccca 25180934  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 25160585 - 25160542
Alignment:
Q  83 aatcaagaaggaatcgactattacaacaacctcatcaatgagtt 126  Q
    ||||||||||||||| |||||||||| || ||||||||||||||    
T  25160585 aatcaagaaggaatcaactattacaataatctcatcaatgagtt 25160542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 25039094 - 25039022
Alignment:
Q  219 accatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccct 291  Q
    ||||||||| || ||||| |||||||||||||| |||  | || |||| || || ||||||||||||||||||    
T  25039094 accatttgtgacccttttccattgggatcttccccaagttttacaagacgagtacagcggtttcttaagccct 25039022  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 42167583 - 42167486
Alignment:
Q  215 tacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgagtgatacaa 312  Q
    |||||||||| |||||||| ||||||||||||||||||||| || |||| ||||| ||||| || ||||||||||||||||| |||| ||||||||||    
T  42167583 tacaaccattcgtaactctatttcattgggatcttcctcaagctttagaggatgagtatagtggcttcttaagccctcttattatgtaagtgatacaa 42167486  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 42157090 - 42156988
Alignment:
Q  210 aggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgagtgata 309  Q
    |||| |||||||||| |||||| | |||||||||||||||||||||||| |||| || || ||| |||| |||||||||||||| ||  ||| |||||||    
T  42157090 aggtctacaaccattcgtaactttatttcattgggatcttcctcaaactttagaggacgagtatggcggcttcttaagccctctcattgtgtaagtgata 42156991  T
Q  310 caa 312  Q
    |||    
T  42156990 caa 42156988  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 312
Target Start/End: Original strand, 42290330 - 42290432
Alignment:
Q  210 aggtttacaaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctcttatcatgtgagtgata 309  Q
    |||| |||||||||| |||||| | ||||||||||||||||||||| || ||||  | || ||| |||| |||||||||||||| ||  ||| |||||||    
T  42290330 aggtctacaaccattcgtaactttatttcattgggatcttcctcaagctttagagaacgagtatggcggcttcttaagccctctcattgtgtaagtgata 42290429  T
Q  310 caa 312  Q
    |||    
T  42290430 caa 42290432  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 42290162 - 42290228
Alignment:
Q  73 tggaggaattaatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggt 139  Q
    |||||| || || ||||||||| || | ||||||||||||||||||||||||||| |||| ||||||    
T  42290162 tggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgagttgttggctaatggt 42290228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 42157262 - 42157196
Alignment:
Q  73 tggaggaattaatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggt 139  Q
    |||||| || || ||||||||| || | ||||||||||||||||||||||| ||| |||| ||||||    
T  42157262 tggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgaattgttggccaatggt 42157196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 42167744 - 42167707
Alignment:
Q  86 caagaaggaatcgactattacaacaacctcatcaatga 123  Q
    |||||||||||| | |||||||||||||||||||||||    
T  42167744 caagaaggaatcaaatattacaacaacctcatcaatga 42167707  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 9213394 - 9213469
Alignment:
Q  218 aaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatagcggtttcttaagccctct 293  Q
    ||||||| || |||||||||||||||||||| || ||||||||||||||||| ||| | || ||||||||||||||    
T  9213394 aaccattggtgactctttttcattgggatctcccacaaactctagaagatgagtatggtggcttcttaagccctct 9213469  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 9213238 - 9213298
Alignment:
Q  83 aatcaagaaggaatcgactattacaacaacctcatcaatgagttggtggcaaatggtaaga 143  Q
    ||||||||||||||| |||||||||||||  |||||||||||||  |||| ||||||||||    
T  9213238 aatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaaga 9213298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 8139397 - 8139448
Alignment:
Q  223 tttgtaactctttttcattgggatcttcctcaaactctagaagatgaatata 274  Q
    ||||||||||| |||||||||||||| || ||| |||| |||||||||||||    
T  8139397 tttgtaactctctttcattgggatctcccacaagctcttgaagatgaatata 8139448  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 29422787 - 29422845
Alignment:
Q  217 caaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatatag 275  Q
    ||||| ||||| || |||||||||||||| ||||||||||| || ||||||||||||||    
T  29422787 caaccctttgtgaccctttttcattgggaccttcctcaaacacttgaagatgaatatag 29422845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 29460304 - 29460248
Alignment:
Q  217 caaccatttgtaactctttttcattgggatcttcctcaaactctagaagatgaatat 273  Q
    ||||| ||||| ||||||||||||||||| |||||||| || || ||||||||||||    
T  29460304 caaccctttgtgactctttttcattgggaccttcctcagacacttgaagatgaatat 29460248  T

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