View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_high_3 (Length: 665)
Name: NF2752_high_3
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 280 - 657
Target Start/End: Complemental strand, 41976002 - 41975624
Alignment:
| Q |
280 |
gtaatcacaatagtgagcgagttctattgtagaatgtattgtcaaagctttttgattcatttatacccaagtaaagcatgataaa-gaaaattgtgtata |
378 |
Q |
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| T |
41976002 |
gtaatcacaatagtgagcgatttctattgtagaatgtattgtcaaagcttttcgattcatttatacccaagtaaagcatgataaaagaaaattgtgtata |
41975903 |
T |
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| Q |
379 |
tttgattgcaagcttttgatgtgtatgagttaatgttttggcatttgtaagttcagtctgttgcattgtcttgatctttgtagtgagagcgtcagtaata |
478 |
Q |
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| T |
41975902 |
tttgattgcaagcttttgatgtgtatgagttaatgttttggcctttgtaagttcagtctgttgcattgtcttgatctttgtagtgagaacgtcggtaata |
41975803 |
T |
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| Q |
479 |
gcaaaggctttatactatatggtttcataggttgcgccgtattactacaactgtgttacaagttagagagctattcctgccttaattacttgtctattta |
578 |
Q |
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| T |
41975802 |
gcaaaggctttatactatatggtttcataggttgcgccgtattactacaactgtgttacaagttagagagctattcctgcctttattacttgtctattta |
41975703 |
T |
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| Q |
579 |
tcgcactagttccttgatgctattgagataaatcgttatttgcaattttgaaaattctctagctaattctcgtagattg |
657 |
Q |
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| T |
41975702 |
tcgcactagttccttgatgctattgagataaattgttatttgcaattttgaaaattctctagctaattctcgtagattg |
41975624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 41976343 - 41976034
Alignment:
| Q |
13 |
acatcatctactgcatagagaaaataattcaatgtaagcttgtggcaaccttgctcgaccttgacgtaacacaatgctgcttcatcacaatgaggattct |
112 |
Q |
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| T |
41976343 |
acatcatatactgcatagagaaaataattcaatctaagcttgtggcaaccttgctcgaccttgacgtaacacaatgctgcttcatcacattgaggattct |
41976244 |
T |
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| Q |
113 |
gcatgctaagtgttgtcatgcacttttgacaatcattttgaaccattgtataagagacatacctcgataatatcactagccttctgtacctttcgatgaa |
212 |
Q |
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| T |
41976243 |
gcatgctaagtgttgtcatgcacttttgacaatcattttgaaccattgtataagagacataccccgataatatcactagccttctgtacctttcgattaa |
41976144 |
T |
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| Q |
213 |
tgtctattaggaacaattcatcaaagcataccattttagctgctgagtttagtgttccgtttttcaggtaatcacaatagtgagcgagttctattgtaga |
312 |
Q |
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| T |
41976143 |
tgtctattaggaacaattcatcaaggcataccattttagctgctgagtttagtgtttggtttttcaggtaatcacaatagtgagcgagttctattgtaca |
41976044 |
T |
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| Q |
313 |
atgtattgtc |
322 |
Q |
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|||||||||| |
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| T |
41976043 |
atgtattgtc |
41976034 |
T |
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