View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_high_33 (Length: 273)
Name: NF2752_high_33
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 266
Target Start/End: Original strand, 28185368 - 28185620
Alignment:
| Q |
14 |
agaaaatccacattgattccataatattccatcaaaaaagcaagtgaaaatatgcacatcgattacacggggctgagaagctgagaaatttgtggttttg |
113 |
Q |
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| T |
28185368 |
agaaaatccacattgattccataatattccatcagaaaagcaagtgaaaatatgcacatcgattacacggggctgagaagctgagaaatttgtggttttg |
28185467 |
T |
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| Q |
114 |
gatcagaattcataccaatgatgataatcaaaggaatgaaaccatagtgagcgatgacctttgttttcttcataccccaagttgtccattccttcacaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28185468 |
gatcagaattcataccaatgatgataatcaaaggaatgaaaccatagtgagcaataacctttgttttcttcataccccaagttgtccattccttcacaga |
28185567 |
T |
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| Q |
214 |
atcgatcactgatcgatcttccgctgtcttctttgagctctttccctttgctt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
28185568 |
atcgatcactgatcgatcttccgctgtcttctttgaactctttcccttcgctt |
28185620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 24746232 - 24746037
Alignment:
| Q |
69 |
acatcgattacacggggctgagaagctgagaaatttgtggttttggatcagaattcataccaatgatgataatcaaaggaatgaaaccatagtgagcgat |
168 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
24746232 |
acatcgattacacggggctgagaagctgagaaagttgtggttttggatcagagttcataccgatgataataatcaaaggaatgaaaccatagtgagcgat |
24746133 |
T |
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| Q |
169 |
gacctttgttttcttcataccccaagttgtccattccttcacagaatcgatcactgatcgatcttccgctgtcttctttgagctctttccctttgc |
264 |
Q |
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| T |
24746132 |
aaccttcgttttcttcataccccatgttgtccattccttcacagaatcaatcactgatcgatcttctactttcttctttgagctatttccctttgc |
24746037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 50 - 264
Target Start/End: Complemental strand, 21833392 - 21833178
Alignment:
| Q |
50 |
aaagcaagtgaaaatatgcacatcgattacacggggctgagaagctgagaaatttgtggttttggatcagaattcataccaatgatgataatcaaaggaa |
149 |
Q |
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||||||||||||||| |||| || ||||| ||||||||||||||| || | |||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
21833392 |
aaagcaagtgaaaatgcgcacgtcaattacttggggctgagaagctgggagagttgtggttttggatcagagttcataccgatgatgataatcaaaggaa |
21833293 |
T |
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| Q |
150 |
tgaaaccatagtgagcgatgacctttgttttcttcataccccaagttgtccattccttcacagaatcgatcactgatcgatcttccgctgtcttctttga |
249 |
Q |
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| T |
21833292 |
tgaaaccatagtgagcgataaccttcgttttcttaataccccatgttgtccattccttcaaagaatcgatcgctgatcgatcttctgctttcttatttga |
21833193 |
T |
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| Q |
250 |
gctctttccctttgc |
264 |
Q |
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| T |
21833192 |
gctctttccctttgc |
21833178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 69 - 264
Target Start/End: Complemental strand, 24708916 - 24708719
Alignment:
| Q |
69 |
acatcgattac--acggggctgagaagctgagaaatttgtggttttggatcagaattcataccaatgatgataatcaaaggaatgaaaccatagtgagcg |
166 |
Q |
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||||||||||| ||||||||||| |||||| ||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||| ||| |||||||| |
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| T |
24708916 |
acatcgattacgcacggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgatgatgataatcaaaggaatgaacccacagtgagcg |
24708817 |
T |
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| Q |
167 |
atgacctttgttttcttcataccccaagttgtccattccttcacagaatcgatcactgatcgatcttccgctgtcttctttgagctctttccctttgc |
264 |
Q |
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|| || || |||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
24708816 |
ataactttcgttttcttcaaaccccatgttttccattccttcacagaatcgatcattgatcgatcttcagctctcttctttgagctctttccctttgc |
24708719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 24708958 - 24708916
Alignment:
| Q |
14 |
agaaaatccacattgattccataatattccatcaaaaaagcaa |
56 |
Q |
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| T |
24708958 |
agaaaatccactttgattccataatactccatcaaataagcaa |
24708916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 12819572 - 12819427
Alignment:
| Q |
20 |
tccacattgattccataatattccatcaaaaaagcaagtgaaaatatgcacatcgattacacggggctgagaagctgagaaatttgtggttttggatcag |
119 |
Q |
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||||||||||||||||||| | ||||||| |||||||||||||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
12819572 |
tccacattgattccataatctcccatcaagtaagcaagtgaaaatgtgcacatggattacacgaggctgagaagctgagaaagttgtggttttggatcag |
12819473 |
T |
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| Q |
120 |
aattcataccaatgatgataatcaaaggaatgaaaccatagtgagc |
165 |
Q |
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| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12819472 |
agttcataccaatgatgataatcaaatgaatgaaaccatagtgagc |
12819427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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