View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_high_9 (Length: 517)
Name: NF2752_high_9
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 4 - 500
Target Start/End: Complemental strand, 49004923 - 49004430
Alignment:
| Q |
4 |
cgagtgagatgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
103 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
49004923 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgctcggagttctttgatttcttcctgccatt |
49004824 |
T |
|
| Q |
104 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004823 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaa |
49004724 |
T |
|
| Q |
204 |
acattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattctaagagc |
303 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
49004723 |
acattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattccaaaagc |
49004624 |
T |
|
| Q |
304 |
tcagtcacctacaaacaatcaacaattaaacatttaaaagagttaacattcatctagagtatgatttcaagcttcaaacagtgtgtaagtgtaacaacta |
403 |
Q |
| |
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|||| |||||||| |||| |||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49004623 |
tcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctagcttatgatttcaagcttcaaacagtgtgtaagtgtaaca---t |
49004527 |
T |
|
| Q |
404 |
tataaagcttccctctgagtaaaattctcaatcttctcaagaacaagagaaatattgagttccatttcttcagaccctatttggttagtctcaaatc |
500 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||| |
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| T |
49004526 |
tatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaatattcagctccatttcttcagacccaacttggttagtctcaaatc |
49004430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 3 - 500
Target Start/End: Complemental strand, 38160947 - 38160453
Alignment:
| Q |
3 |
tcgagtgagatgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccat |
102 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
38160947 |
tcgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcaagtgcacgcagttctttgatttcttcctgccat |
38160848 |
T |
|
| Q |
103 |
ttttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagttta |
202 |
Q |
| |
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||||| |||||||||||||||||||||| |||| ||||||||||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38160847 |
ttttcgacctgctccttgtgaatcctgcatattggaaagttaaaagaataacaccacaaaaagtcaaaaactaacaatattaaaagtgaaagatagtttc |
38160748 |
T |
|
| Q |
203 |
aacattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattctaagag |
302 |
Q |
| |
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| | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38160747 |
agctttgaatgttcaatggtaacttcataactcgcataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattccaagag |
38160648 |
T |
|
| Q |
303 |
ctcagtcacctacaaacaatcaacaattaaacatttaaaagagttaacattcatctagagtatgatttcaagcttcaaacagtgtgtaagtgtaacaact |
402 |
Q |
| |
|
||||| |||||||| |||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |
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| T |
38160647 |
ctcagatacctacaagaaatccacaattaaacatttcaaagatttaacattcatctacagtatgatttcaagcttcaaacagtgtgtaggtgt---aact |
38160551 |
T |
|
| Q |
403 |
atataaagcttccctctgagtaaaattctcaatcttctcaagaacaagagaaatattgagttccatttcttcagaccctatttggttagtctcaaatc |
500 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||| |
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|
| T |
38160550 |
ttatatagctaccctctgagtaaaattctcaatcttctcaagaacaagagaaacattgagttccatttcctcagacccaatttggttagtctcaaatc |
38160453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 4 - 358
Target Start/End: Complemental strand, 38117120 - 38116767
Alignment:
| Q |
4 |
cgagtgagatgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
103 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38117120 |
cgagtgagctgaagtacatatcgagcattttgcagaagagcattggcttcctcatttgaggcatcgagtgcacggagttctttgatttcttcctgccatt |
38117021 |
T |
|
| Q |
104 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaacataaaaagtcaaaaactaacaatatttaaagtgaaagatagtttaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
38117020 |
tttcaacctgctccttgtgaatcctgcttatttgaaagttaaaagaatcacaccataaaaagtcaaaaactaacaatattt-aagtgaaagatagtttaa |
38116922 |
T |
|
| Q |
204 |
acattgaatgttcaatggtaacttcataactcacataatcagtttctcttcaaattcattgcatagctccttaagcattgttttccctgattctaagagc |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
38116921 |
acattgaatgttcaatggtaacttcattactcacataatcagtttctcttcaaattcattgcatagctccttaaacattgttttccctgattccaagagc |
38116822 |
T |
|
| Q |
304 |
tcagtcacctacaaacaatcaacaattaaacatttaaaagagttaacattcatct |
358 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||| ||||| ||||||||||||| |
|
|
| T |
38116821 |
tcagatacctacatgaaatccacaattaaacatttcaaagatttaacattcatct |
38116767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 399 - 500
Target Start/End: Complemental strand, 38116750 - 38116649
Alignment:
| Q |
399 |
aactatataaagcttccctctgagtaaaattctcaatcttctcaagaacaagagaaatattgagttccatttcttcagaccctatttggttagtctcaaa |
498 |
Q |
| |
|
|||| |||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||| |
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|
| T |
38116750 |
aactttatatagctaccctctgggtaaaattctcaatcttctcaagaacaagagaaatattgagctccatttcttcagacccaacttggttagtctcaaa |
38116651 |
T |
|
| Q |
499 |
tc |
500 |
Q |
| |
|
|| |
|
|
| T |
38116650 |
tc |
38116649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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