View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2752_low_1 (Length: 774)

Name: NF2752_low_1
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2752_low_1
NF2752_low_1
[»] chr8 (5 HSPs)
chr8 (20-636)||(34866594-34867210)
chr8 (421-632)||(34389554-34389765)
chr8 (469-625)||(10551685-10551841)
chr8 (488-613)||(9519017-9519142)
chr8 (470-575)||(37987529-37987634)
[»] chr1 (5 HSPs)
chr1 (426-632)||(41919796-41920002)
chr1 (438-632)||(24685050-24685243)
chr1 (451-630)||(4651145-4651322)
chr1 (523-613)||(31586261-31586351)
chr1 (493-596)||(17032835-17032939)
[»] chr7 (6 HSPs)
chr7 (426-632)||(38305574-38305780)
chr7 (467-632)||(3420200-3420365)
chr7 (492-632)||(47326411-47326551)
chr7 (451-592)||(38484915-38485055)
chr7 (493-626)||(37792712-37792845)
chr7 (536-592)||(12480298-12480355)
[»] chr4 (7 HSPs)
chr4 (426-632)||(30963777-30963983)
chr4 (451-627)||(35799957-35800133)
chr4 (494-608)||(16501154-16501268)
chr4 (491-612)||(31051212-31051333)
chr4 (536-590)||(46699512-46699566)
chr4 (549-587)||(4305075-4305113)
chr4 (522-624)||(38929125-38929227)
[»] chr6 (4 HSPs)
chr6 (416-632)||(16510829-16511045)
chr6 (511-630)||(12793536-12793655)
chr6 (564-630)||(9223377-9223443)
chr6 (376-411)||(16511068-16511103)
[»] chr3 (6 HSPs)
chr3 (438-632)||(19175830-19176023)
chr3 (491-631)||(1653458-1653598)
chr3 (451-632)||(20611145-20611325)
chr3 (515-632)||(17501774-17501891)
chr3 (549-629)||(30935940-30936017)
chr3 (562-630)||(25595151-25595219)
[»] chr2 (6 HSPs)
chr2 (428-632)||(39339372-39339574)
chr2 (513-636)||(31902921-31903044)
chr2 (517-630)||(2062247-2062360)
chr2 (523-630)||(22886030-22886137)
chr2 (491-630)||(27739128-27739268)
chr2 (527-592)||(29486398-29486463)
[»] chr5 (2 HSPs)
chr5 (491-590)||(27712379-27712478)
chr5 (470-575)||(697664-697769)


Alignment Details
Target: chr8 (Bit Score: 541; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 20 - 636
Target Start/End: Complemental strand, 34867210 - 34866594
Alignment:
Q  20 taattttcattttgaattttatgggttaagatatggcatgtttatccacttctgtgataatatttttgaagccgtgaggactctttgcttgtagtatttt 119  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34867210 taattttcattttgaattttatgggttaagatatggcatggttatccacttctgtgatgatatttttgaagccgtgaggactctttgcttgtagtatttt 34867111  T
Q  120 tattgtgagtcattatagtcatcactcttcaaaattgttgcttaagtggcattgtgcatgctaaccagctgccatggaaatgccttatgtgtttcaagaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  34867110 tattgtgagtcattatagtcatcactcttcaaaattgttgcttaagtggcattatgcatgctaaccggctgccatggaaatgccttatgtgtttcaagaa 34867011  T
Q  220 gcttctggaggtcaacgaaaaaacaaatctggtgtctagagttccttggaactagtttgtcagatttggtttgtcggataattgtggtggttcagctttt 319  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34867010 gcttctggaggtcaacgaaaaaacagatctggtgtctagagttccttggaactagttagtcagatttggtttgtcggataattgtggtggttcagctttt 34866911  T
Q  320 aatggattttaagagtggttcatgggttggattgcggtgctttggggtgagcttttgggtggtagtttaggttgtgtggtggtggtgatgtgagtaggtt 419  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34866910 aatggattttaagagtggttcatggattggattgcggtgctttggggtgagcttttgggtggtagtttaggttgtgtggtggtggtgatgtgagtaggtt 34866811  T
Q  420 gcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgccttttt 519  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  34866810 gcgggtagtgttgttcaaatccgccatttttgctccaccattgattctcttttactacggcgacgaaaacattctccttgtcacaggcgaccgccttttt 34866711  T
Q  520 atgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctt 619  Q
    |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| | ||    
T  34866710 atgacctgggttgtggttccgcttcaaaccggcgtcgctgcccgtgttttgttgttggatttcgtcttcctctaaatttatgtttgtgttgttgcttgtt 34866611  T
Q  620 tcttggtgaggatattt 636  Q
    |||||||||||||||||    
T  34866610 tcttggtgaggatattt 34866594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 421 - 632
Target Start/End: Complemental strand, 34389765 - 34389554
Alignment:
Q  421 cgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgccttttta 520  Q
    |||| |||||| |||| ||| ||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||| ||||| || | |    
T  34389765 cgggaagtgttattcagatctgccgtttttgctccaccattggttctcttttactacggcgacgaacacattctccttgtcacaggcagccgctttgtca 34389666  T
Q  521 tgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctcttt 620  Q
    |||||||||||||| |||||||||||| |||||||||| ||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||| | |||    
T  34389665 tgatctgggttgtgcttccgcttcaaaccggcgtcgctgcccgtgttttgttgtggaatttcgtcctcctctagatttatgtttgtgttgttgcttgttt 34389566  T
Q  621 cttggtgaggat 632  Q
    ||||||||||||    
T  34389565 cttggtgaggat 34389554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 469 - 625
Target Start/End: Original strand, 10551685 - 10551841
Alignment:
Q  469 ttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttt 568  Q
    ||||||| ||||||| || |  ||||||||||||| | || | |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||| ||    
T  10551685 ttttactccggtgacaaatgtcttctccttgtcaccgacgacagcctttttatgatcggggtcgtgtttccgcttcaaatcggcgtcgctgcccgtgctt 10551784  T
Q  569 tgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttgg 625  Q
    ||||||||| |||||||||||||||||| ||||| |||||||||| || ||||||||    
T  10551785 tgttgttgggtttcgtcttcctctagatctatgtttgtgttgctgtctatttcttgg 10551841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 488 - 613
Target Start/End: Original strand, 9519017 - 9519142
Alignment:
Q  488 gcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtctt 587  Q
    ||||||||||||||| ||| |||  | || |||  || ||||||||| | |||||||||| | |||||||| |||||||||||||||||| |||||||||    
T  9519017 gcattctccttgtcaaaggtggcaacattgttactatttgggttgtgttcccgcttcaaaccagcgtcgctgcccgtgttttgttgttgggtttcgtctt 9519116  T
Q  588 cctctagatttatgtctgtgttgctg 613  Q
     |||||||||| ||| ||| ||||||    
T  9519117 tctctagatttgtgtttgtattgctg 9519142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 470 - 575
Target Start/End: Complemental strand, 37987634 - 37987529
Alignment:
Q  470 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 569  Q
    |||||| ||||| || |||| ||||||||||||| |||||  || | |||| ||||| ||||| | |||||||||| | |||||||||| |||||||| |    
T  37987634 tttacttcggtgccggaagccttctccttgtcaccggcgggtgcgtgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgttat 37987535  T
Q  570 gttgtt 575  Q
    ||||||    
T  37987534 gttgtt 37987529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 131; Significance: 1e-67; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 426 - 632
Target Start/End: Original strand, 41919796 - 41920002
Alignment:
Q  426 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 525  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  |||||  ||||||||||||||||||| |||||| ||| ||||||    
T  41919796 agtgttgttcagatccgccgtttttgctccaccattggttctcttttactacggcaacgaacacattctccttgtcacaggctgccgccatttaatgatc 41919895  T
Q  526 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttgg 625  Q
    |||||||||||||||||||||| | |||||| | ||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||| | ||||||||    
T  41919896 tgggttgtggttccgcttcaaaccagcgtcgttgcccgtgttttgttgtgggatttcatcttcctctagatttatgtttgtgttgttgcttgtttcttgg 41919995  T
Q  626 tgaggat 632  Q
    |||||||    
T  41919996 tgaggat 41920002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 438 - 632
Target Start/End: Complemental strand, 24685243 - 24685050
Alignment:
Q  438 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 537  Q
    ||||||| ||||||||||||||||| |||| ||||||||||| ||||||  |||||||||||||||||||||||  ||||||||||| ||||||||||||    
T  24685243 atccgccatttttgctccaccattggttct-ttttactacggcgacgaacacattctccttgtcacaggcggccagctttttatgatatgggttgtggtt 24685145  T
Q  538 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgaggat 632  Q
    | |||||||| |||||||||| ||||||||||||||||| |||| ||||  || ||||||||||| ||||||| ||| | |||||||||||||||    
T  24685144 ctgcttcaaaccggcgtcgctgcccgtgttttgttgttgaattttgtctctctttagatttatgtttgtgttgttgcttgtttcttggtgaggat 24685050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 451 - 630
Target Start/End: Original strand, 4651145 - 4651322
Alignment:
Q  451 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 550  Q
    ||||||||||||||||||||||||| ||| |||  | |  |||||||| |||| | |||| |||||||||  ||| | |||||  |||||||||||| ||    
T  4651145 gctccaccattgattctcttttactccggcgacagatgtcttctccttatcactgacggctgcctttttacaatcggagttgt--ttccgcttcaaaccg 4651242  T
Q  551 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgagg 630  Q
    | |||||| |  ||||||||||||| | |||||||||||||  ||| ||||| |||||||||| || |||||||||||||    
T  4651243 gtgtcgctgcttgtgttttgttgttaggtttcgtcttcctcatgatctatgtttgtgttgctgtctgtttcttggtgagg 4651322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 613
Target Start/End: Complemental strand, 31586351 - 31586261
Alignment:
Q  523 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctg 613  Q
    |||||||| ||| | |||||||| | |||||||||| |||||||||||||||||| ||||||||| |||| ||||| |||| |||||||||    
T  31586351 atctgggtcgtgttcccgcttcagaccggcgtcgctgcccgtgttttgttgttgggtttcgtctttctctggatttgtgtcagtgttgctg 31586261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 493 - 596
Target Start/End: Original strand, 17032835 - 17032939
Alignment:
Q  493 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt-gttgttggatttcgtcttcctc 591  Q
    ||||||||||| ||||||| | ||||| ||||| |||||||| ||| |||||| | ||| ||| || || ||||||| ||||||||||||||||||||||    
T  17032835 ctccttgtcaccggcggccacatttttttgatcagggttgtgattctgcttcacaccggggtcactacctgtgtttttgttgttggatttcgtcttcctc 17032934  T
Q  592 tagat 596  Q
    |||||    
T  17032935 tagat 17032939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 4e-65; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 426 - 632
Target Start/End: Original strand, 38305574 - 38305780
Alignment:
Q  426 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 525  Q
    |||| |||||| |||||||||||||||||||||||||  ||||||||||||||| |||||| |||||||| ||||||||| |||||||||||  |||||     
T  38305574 agtgctgttcatatccgccgtttttgctccaccattggctctcttttactacggcgacgaacgcattctcgttgtcacagtcggccgcctttaaatgata 38305673  T
Q  526 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttgg 625  Q
    |||||||||||||||||||||| |||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | ||||||||    
T  38305674 tgggttgtggttccgcttcaaaccggcgttgctgcctgtgttttgttgttggatttcgtcttcctctagattgatgtttgtgttgttgcttgtttcttgg 38305773  T
Q  626 tgaggat 632  Q
    |||||||    
T  38305774 tgaggat 38305780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 467 - 632
Target Start/End: Complemental strand, 3420365 - 3420200
Alignment:
Q  467 tcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgt 566  Q
    ||||||||||||| |||||| ||||||||| ||| ||||| | ||||||||||||||||| ||||||||||||||||| || |||||||||| | |||||    
T  3420365 tcttttactacggcgacgaacgcattctccctgttacaggagaccgcctttttatgatctaggttgtggttccgcttcgaaccggcgtcgctgctcgtgt 3420266  T
Q  567 tttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgaggat 632  Q
    ||||||||| | ||||||||||||||| |||||||  ||||||| ||| | |||||||||||||||    
T  3420265 tttgttgtttggtttcgtcttcctctaaatttatgcatgtgttgttgcttgtttcttggtgaggat 3420200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 492 - 632
Target Start/End: Complemental strand, 47326551 - 47326411
Alignment:
Q  492 tctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctc 591  Q
    |||||||||||| ||||||||||||| |||||| | ||||||| || | ||||||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  47326551 tctccttgtcaccggcggccgcctttctatgatttcggttgtgttttcacttcaaatcggtgtcgctgcccgtgttttgttgttggatttcctcttcctc 47326452  T
Q  592 tagatttatgtctgtgttgctgcctctttcttggtgaggat 632  Q
    |||||  || | ||||||||||| | |||||||||||||||    
T  47326451 tagatcaatatttgtgttgctgcttgtttcttggtgaggat 47326411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 451 - 592
Target Start/End: Original strand, 38484915 - 38485055
Alignment:
Q  451 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 550  Q
    |||||||||||| |||| ||||||| ||| |||  | |  ||||||||||||| | ||||| |||||||| |||  |||||||| |||||||||||| ||    
T  38484915 gctccaccattgtttctattttactccggcgacagatgtcttctccttgtcactgacggccacctttttacgatg-gggttgtgtttccgcttcaaaccg 38485013  T
Q  551 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 592  Q
    |||||||| ||| |||||||||||  | ||||||||||||||    
T  38485014 gcgtcgctgcccatgttttgttgtcaggtttcgtcttcctct 38485055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 493 - 626
Target Start/End: Original strand, 37792712 - 37792845
Alignment:
Q  493 ctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 592  Q
    ||||||||||| ||||   ||||||||| ||| ||||||||| |||||||||||| |||||||| |  |||||||||| |||||| |||| |||| ||||    
T  37792712 ctccttgtcaccggcgattgcctttttacgatatgggttgtgtttccgcttcaaaccggcgtcgttgtccgtgttttgctgttgggtttcatctttctct 37792811  T
Q  593 agatttatgtctgtgttgctgcctctttcttggt 626  Q
     |||   ||| |||||||||| || |||||||||    
T  37792812 tgatccgtgtttgtgttgctgtctgtttcttggt 37792845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 536 - 592
Target Start/End: Original strand, 12480298 - 12480355
Alignment:
Q  536 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttc-gtcttcctct 592  Q
    |||| ||||||| |||||||||| | |||||||||||||||| |||| ||||||||||    
T  12480298 ttccacttcaaaccggcgtcgctgctcgtgttttgttgttggttttcagtcttcctct 12480355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 4e-65; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 4e-65
Query Start/End: Original strand, 426 - 632
Target Start/End: Original strand, 30963777 - 30963983
Alignment:
Q  426 agtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatc 525  Q
    |||| |||||| ||||||||||||| ||||||||||| ||||||||||||||   |||||| ||||||||||||||||||||| ||  ||||||||||||    
T  30963777 agtgctgttcagatccgccgttttttctccaccattggttctcttttactacaacgacgaacgcattctccttgtcacaggcgaccatctttttatgatc 30963876  T
Q  526 tgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttgg 625  Q
    |||||||||||||| ||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| | ||||||||    
T  30963877 tgggttgtggttccacttcaaaccggcgtcgatgcccgtgttttgtggttggatttcgtcttcctctagatttatgtttgtgttgttgcttgtttcttgg 30963976  T
Q  626 tgaggat 632  Q
    |||||||    
T  30963977 tgaggat 30963983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 451 - 627
Target Start/End: Original strand, 35799957 - 35800133
Alignment:
Q  451 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 550  Q
    |||||||||||| ||||||| |||| |||||||| | || |||||||||| || | || ||||||||||| | | |||||| || ||||| |||||||||    
T  35799957 gctccaccattggttctcttgtactccggtgacggacgccttctccttgttaccgacgaccgcctttttacgttatgggttatgtttccgtttcaaatcg 35800056  T
Q  551 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtg 627  Q
    |||||| | ||||||||||| |  | | |||||| || || ||||| | | | ||||||||||||| ||||||||||    
T  35800057 gcgtcgttgcccgtgttttgctaataggtttcgtttttctttagatatgtatttgtgttgctgcctgtttcttggtg 35800133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 494 - 608
Target Start/End: Original strand, 16501154 - 16501268
Alignment:
Q  494 tccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctcta 593  Q
    |||||||||| |||||||| |||| || ||| ||||||||| |||| ||||||| |||||||||| ||| |||| ||||||||| ||| |||||||||||    
T  16501154 tccttgtcaccggcggccgtctttatacgatttgggttgtgattccacttcaaaccggcgtcgctgcccatgttgtgttgttggttttagtcttcctcta 16501253  T
Q  594 gatttatgtctgtgt 608  Q
     |||| ||| |||||    
T  16501254 aatttgtgtttgtgt 16501268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 491 - 612
Target Start/End: Complemental strand, 31051333 - 31051212
Alignment:
Q  491 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 590  Q
    |||||||||| |  || ||||||||||||| ||| |||||||||  ||||||||| | |||||||||| |||||||||||||||||| || | |||||||    
T  31051333 ttctccttgttatcggtggccgcctttttacgatttgggttgtgtgtccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttacatcttcct 31051234  T
Q  591 ctagatttatgtctgtgttgct 612  Q
     ||||||| |||  ||||||||    
T  31051233 ttagatttgtgttggtgttgct 31051212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 536 - 590
Target Start/End: Complemental strand, 46699566 - 46699512
Alignment:
Q  536 ttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 590  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||| |||||||    
T  46699566 ttccgcttcaaatcggcgtcgctgcccgtgtattgttgttggaattcatcttcct 46699512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 587
Target Start/End: Original strand, 4305075 - 4305113
Alignment:
Q  549 cggcgtcgcttcccgtgttttgttgttggatttcgtctt 587  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  4305075 cggcgtcgctgcccgtgttttgttgttggatttcgtctt 4305113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 522 - 624
Target Start/End: Original strand, 38929125 - 38929227
Alignment:
Q  522 gatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttc 621  Q
    ||||| ||||||| |||||||||| | ||||||| || |||||||||||||||| | | || ||||||| | ||||||  | || |||| ||||| ||||    
T  38929125 gatctaggttgtgtttccgcttcagaccggcgtcactgcccgtgttttgttgttagttatcatcttccttttgatttagctttgggttgttgcctgtttc 38929224  T
Q  622 ttg 624  Q
    |||    
T  38929225 ttg 38929227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 125; Significance: 6e-64; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 416 - 632
Target Start/End: Complemental strand, 16511045 - 16510829
Alignment:
Q  416 ggttgcgggtagtgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcct 515  Q
    |||| |||| |||| |||||| | ||||||||||||||||||||||| |||||||||||||||| || |||  |||||||||||||||| ||| | ||||    
T  16511045 ggttccgggaagtgctgttcagaaccgccgtttttgctccaccattgtttctcttttactacggagatgaacacattctccttgtcacaagcgactgcct 16510946  T
Q  516 ttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcc 615  Q
    ||||||||| ||||||||||||| |||||||| |||| ||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| |||     
T  16510945 ttttatgatatgggttgtggttctgcttcaaaccggcatcgctgcccgtgttttgttgttggatgtcgtcttcctctagatttatgtttgtgttgttgct 16510846  T
Q  616 tctttcttggtgaggat 632  Q
    | |||||||||||||||    
T  16510845 tgtttcttggtgaggat 16510829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 511 - 630
Target Start/End: Original strand, 12793536 - 12793655
Alignment:
Q  511 cgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttg 610  Q
    |||||||||| ||| ||||||||| || |||||||||  ||||||| | ||||||||||| || |||||||||||||||||| ||| ||  | |||||||    
T  12793536 cgcctttttacgatatgggttgtgttttcgcttcaaactggcgtcgttgcccgtgttttggtgatggatttcgtcttcctctggatctaaatttgtgttg 12793635  T
Q  611 ctgcctctttcttggtgagg 630  Q
    ||| || |||||||||||||    
T  12793636 ctgtctgtttcttggtgagg 12793655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 564 - 630
Target Start/End: Original strand, 9223377 - 9223443
Alignment:
Q  564 tgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgagg 630  Q
    |||||||||||||||||||||||||||||  |||| ||| ||||||||  ||| |||||||||||||    
T  9223377 tgttttgttgttggatttcgtcttcctctgaatttgtgtttgtgttgcctcctgtttcttggtgagg 9223443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 16511103 - 16511068
Alignment:
Q  376 gggtggtagtttaggttgtgtggtggtggtgatgtg 411  Q
    |||||| |||||||||||||||||||||||||||||    
T  16511103 gggtggcagtttaggttgtgtggtggtggtgatgtg 16511068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 438 - 632
Target Start/End: Original strand, 19175830 - 19176023
Alignment:
Q  438 atccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggtt 537  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  19175830 atccgccgtttttgctccaccattggttct-ttttactacggcgacgaatgcattctccttgtcacaggcggctgcctttttatgatatgggttgtggtt 19175928  T
Q  538 ccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgaggat 632  Q
    || ||||||| |||| ||||| |||||||||||||||||||||| |||| ||| ||||||||||| |||| || ||| | |||||||||||||||    
T  19175929 cctcttcaaaccggcatcgctgcccgtgttttgttgttggattttgtctccctttagatttatgtttgtgctgttgcttgtttcttggtgaggat 19176023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 491 - 631
Target Start/End: Complemental strand, 1653598 - 1653458
Alignment:
Q  491 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 590  Q
    ||||||||||||| ||||||  |||| ||| ||||||||||||  || ||||||||| |||||||| | |||||||||||||||||||||||||||||||    
T  1653598 ttctccttgtcactggcggcaaccttgttacgatctgggttgtcttttcgcttcaaaccggcgtcgatgcccgtgttttgttgttggatttcgtcttcct 1653499  T
Q  591 ctagatttatgtctgtgttgctgcctctttcttggtgagga 631  Q
    | | |||||||| ||||||||||||| |||||| |||||||    
T  1653498 ccatatttatgtttgtgttgctgcctgtttcttcgtgagga 1653458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 451 - 632
Target Start/End: Original strand, 20611145 - 20611325
Alignment:
Q  451 gctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcg 550  Q
    |||||||||||| |||||||||||| ||  |||||| || | ||||||||||  ||||||||||||| |||||| | ||||||| || | ||||||| ||    
T  20611145 gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcatcggcggccgcctttctatgattttggttgtgctttcacttcaaaccg 20611243  T
Q  551 gcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgaggat 632  Q
     ||||||| | ||||||||||||||||||||| ||||| ||||||| ||| | ||||||| ||||| |||||||||||||||    
T  20611244 acgtcgctgctcgtgttttgttgttggatttcctcttcatctagatctatatttgtgttgatgcctgtttcttggtgaggat 20611325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 515 - 632
Target Start/End: Complemental strand, 17501891 - 17501774
Alignment:
Q  515 tttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgc 614  Q
    |||||| ||||| ||||||| ||||||||||||  | ||||  |  ||||||||||||||| |||||||||||||||||||| ||| | ||||||||| |    
T  17501891 tttttacgatctaggttgtgtttccgcttcaaactgacgtcattgtccgtgttttgttgttagatttcgtcttcctctagatctatatttgtgttgcttc 17501792  T
Q  615 ctctttcttggtgaggat 632  Q
    || ||| |||||||||||    
T  17501791 ctattttttggtgaggat 17501774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 629
Target Start/End: Complemental strand, 30936017 - 30935940
Alignment:
Q  549 cggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgag 629  Q
    ||||||||||  ||||||||||||||||| |||||   |||||||||||||||| | ||||| || || ||||||||||||    
T  30936017 cggcgtcgctgtccgtgttttgttgttgggtttcg---tcctctagatttatgtttttgttgttgtctgtttcttggtgag 30935940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 562 - 630
Target Start/End: Complemental strand, 25595219 - 25595151
Alignment:
Q  562 cgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtgagg 630  Q
    ||||||||||||||   ||||||| |||||||||||| | | ||||||||||| | |||||||||||||    
T  25595219 cgtgttttgttgttatgtttcgtcatcctctagatttgtttttgtgttgctgcttgtttcttggtgagg 25595151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 428 - 632
Target Start/End: Complemental strand, 39339574 - 39339372
Alignment:
Q  428 tgttgttcaaatccgccgtttttgctccaccattgattctcttttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctg 527  Q
    ||||||||| ||||||||||   |||||||||||| |||||||||||| ||  |||||| || | ||||||||||| ||||||||||||| |||||| |     
T  39339574 tgttgttcagatccgccgttac-gctccaccattggttctcttttactccgccgacgaacgcct-ctccttgtcaccggcggccgcctttctatgatttt 39339477  T
Q  528 ggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttcttggtg 627  Q
    ||||||| || | ||||||| || ||||||| | ||||||||||||||||||||| ||||||||||||| ||| | |||||||||| || ||||||||||    
T  39339476 ggttgtgttttcacttcaaaccgacgtcgctgctcgtgttttgttgttggatttcctcttcctctagatctatatttgtgttgctgtctgtttcttggtg 39339377  T
Q  628 aggat 632  Q
    |||||    
T  39339376 aggat 39339372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 513 - 636
Target Start/End: Complemental strand, 31903044 - 31902921
Alignment:
Q  513 cctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgct 612  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||| |||||  ||||||||    
T  31903044 cctttttatgatctaggttgtgtttccgcttcaaaccggcgtcgctgcccgtgttttgttgttgggtttcgtcttcctctagatctatgttagtgttgct 31902945  T
Q  613 gcctctttcttggtgaggatattt 636  Q
    |  | ||||||| ||||| |||||    
T  31902944 gtttgtttcttgctgaggctattt 31902921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 517 - 630
Target Start/End: Original strand, 2062247 - 2062360
Alignment:
Q  517 tttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcct 616  Q
    |||| ||||||||||||| |||||||||| | |||||||||| |||||||||||||||||| || | |||| |||| ||| | ||| ||||| ||| ||     
T  2062247 tttacgatctgggttgtgtttccgcttcagaccggcgtcgctgcccgtgttttgttgttgggttgcatctttctcttgatctgtgtttgtgtagcttcca 2062346  T
Q  617 ctttcttggtgagg 630  Q
     |||||||||||||    
T  2062347 gtttcttggtgagg 2062360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 630
Target Start/End: Complemental strand, 22886137 - 22886030
Alignment:
Q  523 atctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctctagatttatgtctgtgttgctgcctctttct 622  Q
    ||||||||| || |||||||||| |  |||||||||  ||||||||||||||||| |||| ||||||||| ||| | |  |||||||||||| | |||||    
T  22886137 atctgggttttgtttccgcttcagactggcgtcgctatccgtgttttgttgttgggtttcatcttcctcttgatatgtaactgtgttgctgcttgtttct 22886038  T
Q  623 tggtgagg 630  Q
    ||||||||    
T  22886037 tggtgagg 22886030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 491 - 630
Target Start/End: Original strand, 27739128 - 27739268
Alignment:
Q  491 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 590  Q
    |||| ||||||||  | |||| |||||||  |||||| |||||| ||||||||||   || ||||||| || ||||||||||||| | |||| |||||||    
T  27739128 ttcttcttgtcactagtggccaccttttttcgatctgcgttgtgtttccgcttcagggcgacgtcgctgcctgtgttttgttgtttggtttcatcttcct 27739227  T
Q  591 ctagatttatg-tctgtgttgctgcctctttcttggtgagg 630  Q
    || ||||| || | ||||| ||||| | ||||||| |||||    
T  27739228 cttgatttgtgatttgtgtggctgcttgtttcttgatgagg 27739268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 592
Target Start/End: Original strand, 29486398 - 29486463
Alignment:
Q  527 gggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcctct 592  Q
    |||||||| |||||||||| | |||||||||| |||  ||||||||||| | |||||||| |||||    
T  29486398 gggttgtgtttccgcttcagaccggcgtcgctgcccaagttttgttgtttggtttcgtctccctct 29486463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 491 - 590
Target Start/End: Original strand, 27712379 - 27712478
Alignment:
Q  491 ttctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgttttgttgttggatttcgtcttcct 590  Q
    ||||||||||||| || ||  |||| |||| ||||| | ||||| |||  ||||| | |||||||| | |||||||||||||||||| |||| |||||||    
T  27712379 ttctccttgtcaccggtggttgcctgtttacgatctagattgtgtttctacttcagaccggcgtcgttgcccgtgttttgttgttgggtttcatcttcct 27712478  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 470 - 575
Target Start/End: Original strand, 697664 - 697769
Alignment:
Q  470 tttactacggtgacgaaagcattctccttgtcacaggcggccgcctttttatgatctgggttgtggttccgcttcaaatcggcgtcgcttcccgtgtttt 569  Q
    |||||| ||||| || |||| ||||||||||||| |||    |||| |||| ||||| ||||| | |||||||||| | |||||||||| |||||||  |    
T  697664 tttacttcggtgccggaagccttctccttgtcactggcatgtgcctgtttacgatctaggttgagtttccgcttcagaccggcgtcgctgcccgtgtgct 697763  T
Q  570 gttgtt 575  Q
    ||||||    
T  697764 gttgtt 697769  T

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