View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2752_low_11 (Length: 454)
Name: NF2752_low_11
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 3056911 - 3057340
Alignment:
| Q |
9 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcattggaggac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3056911 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttatgtgcattggttgagggtgacaatgaagcattggaggac |
3057010 |
T |
|
| Q |
109 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057011 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaag |
3057110 |
T |
|
| Q |
209 |
gtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggcaacttgtgctaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057111 |
gtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggcaacttgtgctaa |
3057210 |
T |
|
| Q |
309 |
tacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccgtaatatttgcatttatgtttgtgtatcaaga |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3057211 |
tacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccgtaatatttgcatttatttttgtgtatcaaga |
3057310 |
T |
|
| Q |
409 |
tgttgtttccatattatggtaggttccaat |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3057311 |
tgttgtttccatattatggtaggttccaat |
3057340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 3036043 - 3036348
Alignment:
| Q |
9 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcattggaggac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3036043 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaatgatggtgctttagatgcattggttgagggtgacaatgaagcattggaggac |
3036142 |
T |
|
| Q |
109 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
3036143 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatgtcttagaccaaccatgagaaatgtggtacatatgcttgaag |
3036242 |
T |
|
| Q |
209 |
gtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggcaacttgtgctaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||| |
|
|
| T |
3036243 |
gtactgttgaagtgcaagttccaccatacccctcaccaattagtattcaatattctctaaattaataagttgggaagcaaagattggcaacttgtgctaa |
3036342 |
T |
|
| Q |
309 |
tacttg |
314 |
Q |
| |
|
|||||| |
|
|
| T |
3036343 |
tacttg |
3036348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 3070001 - 3069732
Alignment:
| Q |
9 |
agatgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcattggaggac |
108 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
3070001 |
agatgaagacaaagctatcttaactgattgggcttatgattgctacaaatatggtgctttaggtgcattggttgagggtgacaatgaggcattggaggac |
3069902 |
T |
|
| Q |
109 |
aaggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaag |
208 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||| ||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
3069901 |
aaggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatgcatgtcttagatcaaccatgagaaatgtgatacatatgcttgaag |
3069802 |
T |
|
| Q |
209 |
gtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagt |
278 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3069801 |
gtactgttgaagtgcaagctccgttaaacccctcaccgtttagtattcaatattctctaaattaataagt |
3069732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 3049038 - 3048840
Alignment:
| Q |
11 |
atgaagacaaagcaattttaactgattgggcttatgattgctacaaagatggtgctttaggtgcattggttgagggtgacaatgaagcattggaggacaa |
110 |
Q |
| |
|
||||| ||||||| || |||||||| ||||||||||| ||||||||||| ||| | ||| | | |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3049038 |
atgaatacaaagctatcttaactgaatgggcttatgactgctacaaagaaggtattctagatcccttggttgagggtgacaatgaggcattgaaggacaa |
3048939 |
T |
|
| Q |
111 |
ggaaaatttggagaaattggtaatgattgctctttggtgtgttcaagaggatccatatcttagaccaaacatgagagatgtggtacatatgcttgaagg |
209 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
|
|
| T |
3048938 |
ggaaaatttggagaaattggtaaagattgctatttggtgtgttcaagaggatccatatcttagaccaaccatgagaaatgtgatacatatgcttgaagg |
3048840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 200 - 309
Target Start/End: Complemental strand, 3048436 - 3048326
Alignment:
| Q |
200 |
tgcttgaaggtactgttgaagtgcaagttccaccat--acccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataactttgtaag-gaagattggca |
3048338 |
T |
|
| Q |
298 |
acttgtgctaat |
309 |
Q |
| |
|
||||||||||| |
|
|
| T |
3048337 |
gcttgtgctaat |
3048326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 329 - 438
Target Start/End: Original strand, 3036322 - 3036430
Alignment:
| Q |
329 |
aagattgacaacttgtgctgatacttgttgtgctctttt-aagtgtaccgt--aatatttgcatttatgtttgtgtatcaagatgttgtttccatattat |
425 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3036322 |
aagattggcaacttgtgctaatacttgc---gctctttttaagtgtaccgtgtaatatttgcatttatgtttgtgt-tcaagatgtgatttccatattaa |
3036417 |
T |
|
| Q |
426 |
ggtaggttccaat |
438 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
3036418 |
ggtaggtcccaat |
3036430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 28445708 - 28445739
Alignment:
| Q |
25 |
attttaactgattgggcttatgattgctacaa |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
28445708 |
attttaactgattgggcttatgattgctacaa |
28445739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 28488302 - 28488343
Alignment:
| Q |
12 |
tgaagacaaagcaattttaactgattgggcttatgattgcta |
53 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28488302 |
tgaagaaaaagggattttaactgattgggcttatgattgcta |
28488343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 28466554 - 28466582
Alignment:
| Q |
25 |
attttaactgattgggcttatgattgcta |
53 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28466554 |
attttaactgattgggcttatgattgcta |
28466582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University