View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2752_low_12 (Length: 431)
Name: NF2752_low_12
Description: NF2752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2752_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 44563343 - 44562943
Alignment:
| Q |
14 |
gaaggcggaatcacacttctacaaagaatgggagttggaatgtttattgctatactatgcatgttagtatctggcgtggtagaatggaaaagaaggacca |
113 |
Q |
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| T |
44563343 |
gaaggcggaatcacacttctacaaagaatgggagttggaatgtttattgctatactatgcatgttagtatctggcgtggtagaatggaaaagaaggacca |
44563244 |
T |
|
| Q |
114 |
tggctattaataatcctataggatttgaaccgagaaatggtgcgatttcttccatgtcgggaatgtggttaattcctcagttagcactagcaggattttc |
213 |
Q |
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| T |
44563243 |
tggctattaataatcctataggatttgaaccgagaaatggtgcgatttcttccatgtcgggaatgtggttaattcctcagttagcactagcaggattttc |
44563144 |
T |
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| Q |
214 |
tgatgcatttactttggttggacaagttgaattttactacaaacagtttcctgagaatatgagaagtctcgcagggtcactgnnnnnnngtggcttggca |
313 |
Q |
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| T |
44563143 |
tgatgcatttactttggttggacaagttgaattttactacaaacagtttcctgagaatatgagaagtcttgcagggtcactgtttttttgtggcttggca |
44563044 |
T |
|
| Q |
314 |
ctatcaagttattttagtagtttgttgattacaattattcataggttgacggttaaatctgcaacagggaattggttaccacaggatttgaatgaaggga |
413 |
Q |
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| T |
44563043 |
ctatcaagttattttagtagtttgttgattacaattattcataggttgacggttaaatctgcaacagggaattggttaccacaggatttgaatgaaggga |
44562944 |
T |
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| Q |
414 |
g |
414 |
Q |
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| T |
44562943 |
g |
44562943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 275
Target Start/End: Complemental strand, 44541758 - 44541713
Alignment:
| Q |
230 |
gttggacaagttgaattttactacaaacagtttcctgagaatatga |
275 |
Q |
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| T |
44541758 |
gttggacaaattgaattttactataaacagtttcctgagaatatga |
44541713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 226 - 369
Target Start/End: Complemental strand, 25289395 - 25289252
Alignment:
| Q |
226 |
tttggttggacaagttgaattttactacaaacagtttcctgagaatatgagaagtctcgcagggtcactgnnnnnnngtggcttggcactatcaagttat |
325 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||| || ||||||||||||||||||||||| |
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| T |
25289395 |
tttggttggataagttgaattttactacaaaccgtttcctgagtatatgagaattcttgcagggtcattgtttttttgtggcttggcactatcaagttat |
25289296 |
T |
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| Q |
326 |
tttagtagtttgttgattacaattattcataggttgacggttaa |
369 |
Q |
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| T |
25289295 |
tttagtagtttgttgattacaattattcataggttgacggttaa |
25289252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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